LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Enph11g1219	ATGGGGCCAAATACAGGTTCTTTGTCGGCGGTGGCGCAGCAGGCGGAGCGACTTCGAATAAACGGCAATAGATACTTCAAGAAAGATCGTTTCGGAGCTGCCATCGATGCGTATACGGAGGCAATTACGCTAGTTCCCAACAATCCGGTTTATTTCACGAACCGTGCTCTTTGCCATCGCAAGCGGAATGACTGGGCGAGAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTTAATCACAATTCAGTCAAGGCCCACTATATGTTGGGACTTGTGTTACTGCAGAGACAAGAATATGTCAAGGGAATCAAAGAATTGCAGAAGGCTTTGGATCTTGGGAGAGGAGACAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAAGAGCTAGCAAAAGCAAAATACCTAGAATGGGAACATTCATCTACCAAACGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGTCCGCTCTAAAGGAAAAGCATCTTCATGATGTCTCGCAAAGAGAAGGTTTTTTAGATGAAGATCCATCCTTCCCGTCGGAACAACTAGAGGCTTTAGGAAGAGTATTCAGTAAAGCTGCAGAGGATGATACACCTACTGAGGTGCCAGATCACCTTAGCTGTAGAATTACGCTTGAAATTTTCCGTGATCCTGTCATTACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGATCATCTTAAGAAGGTTGGTAGGTTTGATCCGGTGACGCGAGAACCACTTAATCCATCCCAGCTAATACCAAACTTAGCCATAAAGGAGGCAGTCCAATCATTCTTGGACAAACATGGATGGGCTTACAAGGTAGATTAG	849	0.4499	MGPNTGSLSAVAQQAERLRINGNRYFKKDRFGAAIDAYTEAITLVPNNPVYFTNRALCHRKRNDWARVEEDCRKAIQLNHNSVKAHYMLGLVLLQRQEYVKGIKELQKALDLGRGDNPKGYMVEEIWQELAKAKYLEWEHSSTKRSWELQSLKEACESALKEKHLHDVSQREGFLDEDPSFPSEQLEALGRVFSKAAEDDTPTEVPDHLSCRITLEIFRDPVITPSGLTYERAVILDHLKKVGRFDPVTREPLNPSQLIPNLAIKEAVQSFLDKHGWAYKVD	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Enph11g1219	282	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	203	281	IPR013083	-
	Enph11g1219	282	SMART	tpr_5	83	116	IPR019734	GO:0005515
	Enph11g1219	282	SMART	tpr_5	49	82	IPR019734	GO:0005515
	Enph11g1219	282	SMART	tpr_5	15	48	IPR019734	GO:0005515
	Enph11g1219	282	SMART	Ubox_2	208	271	IPR003613	GO:0004842\|GO:0016567
	Enph11g1219	282	Pfam	Anaphase-promoting complex, cyclosome, subunit 3	47	108	-	-
	Enph11g1219	282	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CHIP	9	280	IPR045200	GO:0000209\|GO:0061630
	Enph11g1219	282	Gene3D	Tetratricopeptide repeat domain	9	145	IPR011990	GO:0005515
	Enph11g1219	282	ProSiteProfiles	TPR repeat profile.	15	48	IPR019734	GO:0005515
	Enph11g1219	282	SUPERFAMILY	RING/U-box	197	279	-	-
	Enph11g1219	282	CDD	RING-Ubox_CHIP	205	275	IPR045202	-
	Enph11g1219	282	SUPERFAMILY	TPR-like	13	135	IPR011990	GO:0005515
	Enph11g1219	282	ProSiteProfiles	TPR repeat profile.	83	116	IPR019734	GO:0005515
	Enph11g1219	282	Pfam	U-box domain	205	277	IPR003613	GO:0004842\|GO:0016567
	Enph11g1219	282	ProSiteProfiles	U-box domain profile.	204	278	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Enph11g1219	Enph-Chr11	19517170	19524568	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Enph11g1219	5	281	U-box Gene Family	AT3G07370	68.231	6.15e-142	399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Enph11g1219	K09561		-	qsa:O6P43_016950	459.144