LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Enph11g0426	ATGCAGAATCACAGGCTTAAGCAGCAACAGCAAGCTTTGATGCAACAAGCTCTTCTTCAACAGCAGTCTCTCTACCATCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATACATACACAGGTAACTGAACCACTTCTGCAAGAAGTTTTTGCAAGTACTGGACCAGTAGAGGGTTGTAAGCTTATAAGAAAGGAGAAGTCATCCTATGGATTTATTCACTACTTTGATCGAAGATCTGCTGCTCTTGCTATATTATCTCTCAATGGAAGGCACCTGTTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGTCCTGAGGTCACTGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCCATGGTGTCTCTTTTTTGGTTCCAGAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGCTCTCTAGAGGGTTTGGGTTTGTTTCATTCCGTAATCAACAGGATGCTCAAAGTGCAATAAATGATTTGACTGGTAAATGGCTTGGTAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGGTCTAATGAAGACAAGCAAAACTCTGACACTAAAAGTGTGGTCGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAAAACAATCCTCAATATACTACTGTCTACGTGGGCAATCTTGCTCCAGAGGTTACCCAGCTTGATCTCCATCGCCACTTCCATGCCCTTGGGGCTGGAATGATAGAGGAGGTTCGTGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTATTGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCCCAATCTATTCTCTGTGGAAAACCGATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCACCCGGAACTGCTTCAAATCCTCTCCCTCCACCTGCAGCTGCACCTCTGCCAGGCTTCTCTGCAACTGATCTTCTGGCCTATGAGAGACAGCTTGCAATGAGCAAGATGGGTGGTGTACATGCCCTGATGCATCCCCAAGGACAGCATCCTCTTAAACAGGCAGCAATTGGAGGAAGCCAAGCAATATATGATGGTGGATTTCAGAATGTTGCTGCCGCCCAACAGATGATGTACTACCAGTAA	1281	0.4614	MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSMVSLFWFQRCKGNVGSEDWALSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGMIEEVRVQRDKGFGFVRYCTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGFSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Enph11g0426	426	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	53	127	IPR000504	GO:0003723
	Enph11g0426	426	Gene3D	-	136	242	IPR012677	-
	Enph11g0426	426	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	268	343	IPR000504	GO:0003723
	Enph11g0426	426	SMART	rrm1_1	54	123	IPR000504	GO:0003723
	Enph11g0426	426	SMART	rrm1_1	139	221	IPR000504	GO:0003723
	Enph11g0426	426	SMART	rrm1_1	269	339	IPR000504	GO:0003723
	Enph11g0426	426	SUPERFAMILY	RNA-binding domain, RBD	256	347	IPR035979	GO:0003676
	Enph11g0426	426	SUPERFAMILY	RNA-binding domain, RBD	51	226	IPR035979	GO:0003676
	Enph11g0426	426	MobiDBLite	consensus disorder prediction	224	267	-	-
	Enph11g0426	426	Gene3D	-	1	135	IPR012677	-
	Enph11g0426	426	CDD	RRM1_PUB1	55	125	-	-
	Enph11g0426	426	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	138	225	IPR000504	GO:0003723
	Enph11g0426	426	FunFam	oligouridylate-binding protein 1B-like isoform X2	1	135	-	-
	Enph11g0426	426	FunFam	Oligouridylate-binding protein 1C	245	347	-	-
	Enph11g0426	426	Gene3D	-	245	347	IPR012677	-
	Enph11g0426	426	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	51	346	-	-
	Enph11g0426	426	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	55	121	IPR000504	GO:0003723
	Enph11g0426	426	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	187	219	IPR000504	GO:0003723
	Enph11g0426	426	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	270	333	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Enph11g0426	Enph-Chr11	11507524	11513804	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Enph11g0426	48	343	Eukaryotic Initiation Factors Gene Family	AT1G49760	27.619	1.11e-22	99.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Enph11g0426	K13201		-	gmx:100781227	755.747