Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2202 ATGCAATTAGCATCAAATGGTGACAAGGAACAATGTTCAGAAACTGAACCCATCTTGAATCAGCAGCATCTAAATTTGCAAGCATCTGGAGAGTCTTCATTTTCCTGTGAAATTATTGCTGCTGGCAGTGATGATTTACATAATGTTCATGTTGATGAGACTTGTCATCTGGTGAACACGGATCAGCCACAATGCCGGATATGCCTTGATATTGGAGGAGAAGATTTGATAGCTCCTTGCCATTGCAAAGGTACCCAAAAGTATGTTCACAGATCATGTCTCGATAATTGGAGGTCTACAAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTTCCACCAGATCGGTGGTGGTTGAGATTAAAGTTTCAGTTCCTTGTTGCCAGAGATCATGCATTCATATTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGGGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTTGCCATTGTTTTGGTGGGCTTGCTCTATGGCTTCTTCATAGCCATAATATGCGGCCAAAGAATCAACGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTGA 759 0.4111 MQLASNGDKEQCSETEPILNQQHLNLQASGESSFSCEIIAAGSDDLHNVHVDETCHLVNTDQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2202 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 117 IPR013083 -
Dod10g2202 252 CDD RING_CH-C4HC3_MARCH 65 113 - -
Dod10g2202 252 PANTHER OS02G0132300 PROTEIN 2 251 - -
Dod10g2202 252 SMART ringv_2 64 113 IPR011016 GO:0008270
Dod10g2202 252 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 251 - -
Dod10g2202 252 Pfam RING-variant domain 65 112 IPR011016 GO:0008270
Dod10g2202 252 SUPERFAMILY RING/U-box 59 116 - -
Dod10g2202 252 ProSiteProfiles Zinc finger RING-CH-type profile. 57 119 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2202 Dod-Chr10 43993951 44000001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2202 31 211 C3H Transcription Factor Family AT1G50440 67.539 1.60e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2202 - - gmx:100789593 496.508