Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2190 ATGAATGGCTGCCAAAAATCCTTAATTTCGGGGCAGCCTTACAGCTCTCTCTATTTCAATCCCCTGACGGAGGAGGTGAGGCACACCCGCAGCTGCAGCGACTGCGACTATGGCCGCTTAGCCGCCAAAGGCGTGGACTTTGAGGACCCCTCCTACAACACTTCAACAACAACCCATCATTTCGGCAAGGAGAATGCGGTGCCCATCAATGGCAATGGCCTCCCCTCCTCCTCCTCCACTTCTTCTCTGCCTCCCAGGCTCAGCAAGCAGTTCCCAAAGTCCAAGTCTTTGTCCACCACAGACAGGATTCTGAAGCCCTCCTCTCTCCACTTCTGCATGCAAATGAACGAGCCCGACAGGACCACCACTCTGACTTTTGGGTCCAAGTTATGGGATCCTCTTGAATCCACCTCTTCCAATTCCAATATCTGGGACTACTCTGACTCCGACGCTGCTCCTGCTTCTTCCTGGTCCACTCTCCCCAATAAGTCATTGATCTGTAGACCCTTGCCCATAGATATTGGAAGGTGTGCGTGTGTTATTGTGAAGGAAGCAACTCCACAAGGACTACCTGCAGGTGCAGGGGGCACTCTCTATTCTCTTCATACCTATGAAGGTCAGGGACGGCAGAACAGGAAACTAGCTGTGGCTCATCACAGGCGGCGGAATGGGAAGTCTCAGTTCACCGTAGCGCACAACGTAAAAGGTCTACTGTCCAATTCAGATGATAGTTTTCTTGGAACCGTGACAGCTAATCTTATGGGCTCAAAATACCATATTTGGGATCAGGCATATCGTCATAATTCCCATACTAAACAACCAAAACCGCCTCTAGCTGTTGTCACGTATATACCTACAATAGCAACATGTAGTGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAATCTATGTCACTGAAGAACACGAGTCAGGTACAACATATTAAAGGGTTGCCAATGGATTGGGAGGGGAAATTGGACAGAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAACGGAAGGACAGGACTTAAAATACAGAGATCGGTAAAAAATTTCCAGCTCACCTTAGAGGAAAATGGGAAGCAGACGATACTACAGCTAGGTAGGGTGGGAAAATCAAAATTTGTTATGGACTACAGATATCCTTTGACGGGTTACCAGGCGTTTTGCATATGTCTGGCTTCCATTGATGCAAAGCTTTGTTGCACAGTGTAG 1269 0.4768 MNGCQKSLISGQPYSSLYFNPLTEEVRHTRSCSDCDYGRLAAKGVDFEDPSYNTSTTTHHFGKENAVPINGNGLPSSSSTSSLPPRLSKQFPKSKSLSTTDRILKPSSLHFCMQMNEPDRTTTLTFGSKLWDPLESTSSNSNIWDYSDSDAAPASSWSTLPNKSLICRPLPIDIGRCACVIVKEATPQGLPAGAGGTLYSLHTYEGQGRQNRKLAVAHHRRRNGKSQFTVAHNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQAYRHNSHTKQPKPPLAVVTYIPTIATCSGSHRSMRAYIPKHQSMSLKNTSQVQHIKGLPMDWEGKLDRVHQLFSRVPLYNKISKQFELDFRDNGRTGLKIQRSVKNFQLTLEENGKQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2190 422 MobiDBLite consensus disorder prediction 56 99 - -
Dod10g2190 422 PRINTS Tubby superfamily signature 358 374 IPR000007 -
Dod10g2190 422 PRINTS Tubby superfamily signature 245 269 IPR000007 -
Dod10g2190 422 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Dod10g2190 422 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Dod10g2190 422 MobiDBLite consensus disorder prediction 70 99 - -
Dod10g2190 422 PANTHER TUBBY-RELATED 1 420 - -
Dod10g2190 422 Pfam Tub family 168 415 IPR000007 -
Dod10g2190 422 Gene3D Tubby Protein; Chain A 159 421 IPR025659 -
Dod10g2190 422 PANTHER TUBBY-LIKE PROTEIN 8 1 420 - -
Dod10g2190 422 SUPERFAMILY Tubby C-terminal domain-like 154 421 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2190 Dod-Chr10 43823598 43827301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2190 95 315 TUB Transcription Factor Family AT1G16070 55.804 6.09e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod10g2190 Tub 4e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2190 K19600 - jre:109010979 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2190 10 43823598 43827301 Dod10g2190 10 43823598 43827301 ECH