LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g2163	ATGTCTGGTGAAGAAGATGCTGTTGCAGCTGAGCCAGCTGCATCAATTCCTGGTGAGCCAATGGACATTATGACTGCCTTACAGCTTGTGCTGAGAAAATCATTGGCTTATAGTGGACTCGCACGGGGTCTTCATGAAAGTGCGAAAGTGATCGAGAAGCATGCTGCACAACTGTGTGTTCTAGCAGAGGATTGTGACCAGCCTGATTATGTCAAACTGGTGAAAGCCCTTTGTGCAGAGCACAATGTTAGCCTGTTGACAGTTCCAAGTGCTAAGACCCTCGGGGAATGGACTGGTTTGTGCAAGATTGATTCAGAAGGAAAGGCGAGGAAGGTAAATGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGCGAGGAACATGAAGCCTATAATGTGGTTCTGCAACATGTAAAATCTCACTGA	423	0.4704	MSGEEDAVAAEPAASIPGEPMDIMTALQLVLRKSLAYSGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWTGLCKIDSEGKARKVNGCSCVVVKDFGEEHEAYNVVLQHVKSH*	141

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g2163	140	PANTHER	40S RIBOSOMAL PROTEIN S12	1	140	-	-
	Dod10g2163	140	PRINTS	Ribosomal protein S12E family signature	44	60	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Dod10g2163	140	PRINTS	Ribosomal protein S12E family signature	110	123	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Dod10g2163	140	PRINTS	Ribosomal protein S12E family signature	85	106	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Dod10g2163	140	PRINTS	Ribosomal protein S12E family signature	30	43	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Dod10g2163	140	Gene3D	-	7	140	IPR029064	-
	Dod10g2163	140	PANTHER	40S RIBOSOMAL PROTEIN S12	1	140	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Dod10g2163	140	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	26	119	IPR004038	-
	Dod10g2163	140	SUPERFAMILY	L30e-like	20	138	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g2163	Dod-Chr10	43504875	43507103	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g2163	16	140	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	73.600	7.56e-65	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g2163	K02951		-	gmx:100500093	263.848