Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2158 ATGGACCTTCAAAGGCCAGAGCCACGTCCATCTGAAAATTTGAACATCTCAAACCAGGTTCCTTCAATGGATCATAACCAAACAGAGAAGGAAGATGAAAAACACCAGCATGATTCAGCTCCACGTCTTCTACTGGATCTAAGTCTCTCTAGTAAAGATTCATCAGGTGATGATGACACAAAGCCAGGATTGAATCTCATCAATTGTTTCCATACAAATTCGTCCAACAACTCCTCAGAATCTAGTCATACTCATGGGAATGAGCTGGAGCCCCGGATGTTCTCATGCAACTACTGCCAGAGAAAGTTTTATAGTTCACAGGCACTTGGGGGACACCAGAATGCACATAAGCGTGAAAGAACTATGGCAAAAAGAGGACATAAAGCAGCTGCTGCAGTTCCACTTGATTTTGGACAGAGGTACCCCAGTATCAGCATGGCTTCTCTGCCTCTGCATGGCTCGTATAACAGATCACTTGGAATTCAGGTGCATTCTATGATTAACAAACCCTCTTATCAAACACCCTTTTTTGGTTTGTCCCGTTACCATCTGTGGCAGAGGAAGCCTATGGATTCACAACCAGCAATCGGGAAGCTGGTGCCACAAGAATTTGGAGGCTTCTTGTTGGGAATGGGTGGTATTACCCATTTGAATAGTACGAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 705 0.4426 MDLQRPEPRPSENLNISNQVPSMDHNQTEKEDEKHQHDSAPRLLLDLSLSSKDSSGDDDTKPGLNLINCFHTNSSNNSSESSHTHGNELEPRMFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGHKAAAAVPLDFGQRYPSISMASLPLHGSYNRSLGIQVHSMINKPSYQTPFFGLSRYHLWQRKPMDSQPAIGKLVPQEFGGFLLGMGGITHLNSTKQEELQKLDLSLKL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2158 234 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 26 199 - -
Dod10g2158 234 SUPERFAMILY beta-beta-alpha zinc fingers 91 122 IPR036236 -
Dod10g2158 234 MobiDBLite consensus disorder prediction 1 42 - -
Dod10g2158 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Dod10g2158 234 MobiDBLite consensus disorder prediction 25 41 - -
Dod10g2158 234 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Dod10g2158 234 Gene3D Classic Zinc Finger 71 137 - -
Dod10g2158 234 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 199 IPR044246 GO:0009788
Dod10g2158 234 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2158 Dod-Chr10 43454185 43455082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2158 12 234 C2H2 Transcription Factor Family AT5G10970 39.062 5.31e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g2158 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2158 - - gmx:100809585 275.018