Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2156 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCCTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACAAGAATATGGCTAGGAACGTTTGAAACGGCAGAAGACGCAGCAAGAGCATATGACGAAGCAGCGAGGCTCATGTGCGGGCCAAAAGCACGCACCAACTTCACGTACAATCCCAATGAGCCACACTCCTCTTCATCGAAGCTCCTCTCTGCAACTTTGACAGCAAAGCTACACAAGTGTCACATGGCTTCCCTTTCCCTTCAAATGGCCAAGCAGAAACAGCCACCACACAAAGAGTCTCACTCTCACTCTCACCCTCAAGGGGCTCATAGTAATCACAGGTCCAGCCCATTTGCCTCTGGCAATGCCGTTGCCGGAGCAAGCTCGGACACGGGTTTGAGATGGCCAGAGAAGAGGCACGAGGAGCTGCAATGGCTACAAGGGAATTGGGTTGTCAAGGAAGAAGGCCAATTAGTTGAAGCCGCAGAGCAAGGATTTCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATACAGGAATTGCTTCATTATGGCTCAATTGAGCTTTGCTCTGTTGCCTCATCTGAGGCACTAAAATGCTGA 633 0.5103 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFTYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKQPPHKESHSHSHPQGAHSNHRSSPFASGNAVAGASSDTGLRWPEKRHEELQWLQGNWVVKEEGQLVEAAEQGFQPVLEDDHIEQMIQELLHYGSIELCSVASSEALKC* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2156 210 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Dod10g2156 210 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Dod10g2156 210 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Dod10g2156 210 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Dod10g2156 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
Dod10g2156 210 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Dod10g2156 210 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Dod10g2156 210 MobiDBLite consensus disorder prediction 97 140 - -
Dod10g2156 210 PANTHER ETHYLENE RESPONSE FACTOR 1 201 - -
Dod10g2156 210 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Dod10g2156 210 MobiDBLite consensus disorder prediction 118 136 - -
Dod10g2156 210 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2156 Dod-Chr10 43425542 43426745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2156 1 208 AP2-EREBP Transcription Factor Family AT5G25190 59.135 2.24e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod10g2156 AP2 9.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2156 - - gmx:100777851 306.219