Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2144 ATGGAGCAGTCATGGGAAAATTGGCCTCTTCACACGGAGATGGGGCATGATGGTGATTTCCTAGAGCAGTGCCACACTGATGATGACGATTTCCTCAGAGACATACTGCAGCAACCGGATTTCTATTCAGAAAGCGATGAGGCTCAATCTTTTCATCATCCTTCTCCTCCCATTGTCCACAACAACAACTTCACCGCCTCAGCTGCCGCCACCGCCACGGACGGCAGCAGCATATCCTCCGATGAGACAGAGAGCCCTGGGAAGAGGCCTTCCCCAGCTTCCTCGTCTCCAAGGACATTCATTCTATCTTTCGATAACTCCACCATAGTACCGGCTACGCCAGAACAACCTCACCAGCTTGGTTATCGCCAATCGGGAAGTGGAACTACAACTGCAACGCGTTCTTCGAAATCTAGTTCCCCTTTGTCCTCAAAGAAACGGGCCATGGTGGATGATAATAATGATCATCAGAACTTGGAACCAAAGCCTAGAGCAAGTCAAGGAGGGAAGAAGAGTAGGAACGACTCTCAGATTCTGGATCACATAATGGCAGAGAGGAAAAGGAGACAGGAGCTCACAGAGAGGTTCATAGCACTCTCAGCCACTATTCCTGGCTTGAAGAAGACGGACAAGGCATCTATACTTCGGGAAGCTATCAATTACGTGAAACAACTTCAAGAACGTGTAACGGAGCTAGAAAAGAGAAACAAGAGAGGCCCAGAATCAATGATATTGGTCAAGAAGACTGATCTATGTGGAAATGAGGACACAATCTCAAGTGAAACAAGTTCTGAGGATTGCTGTAGACCAAGCGAATTGCTCCCAGATGTTGAAGCCAGAGTGTTGGAGAAGGAGGTACTCATTGAGATCCACTGTGAGAAATCAAACGGCGTTGAGATCAAAATAATCCACCAGCTTGAAAATCTTCACCTCAGTGTCACCAGCAGCAGCGTATTGCCGTTCGGAAATTCCACTCTCGGTATTACTATTATTGCTCAGATGGGTGACGCGTACAGGATGAGAGTGAATGATCTAGTGAAAAGCCTACGGAAAGTGCTATTGAATCACAGTTACTGA 1077 0.4717 MEQSWENWPLHTEMGHDGDFLEQCHTDDDDFLRDILQQPDFYSESDEAQSFHHPSPPIVHNNNFTASAAATATDGSSISSDETESPGKRPSPASSSPRTFILSFDNSTIVPATPEQPHQLGYRQSGSGTTTATRSSKSSSPLSSKKRAMVDDNNDHQNLEPKPRASQGGKKSRNDSQILDHIMAERKRRQELTERFIALSATIPGLKKTDKASILREAINYVKQLQERVTELEKRNKRGPESMILVKKTDLCGNEDTISSETSSEDCCRPSELLPDVEARVLEKEVLIEIHCEKSNGVEIKIIHQLENLHLSVTSSSVLPFGNSTLGITIIAQMGDAYRMRVNDLVKSLRKVLLNHSY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2144 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Dod10g2144 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 242 IPR036638 GO:0046983
Dod10g2144 358 SMART finulus 182 231 IPR011598 GO:0046983
Dod10g2144 358 Gene3D - 177 245 IPR036638 GO:0046983
Dod10g2144 358 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 356 - -
Dod10g2144 358 PANTHER BHLH TRANSCRIPTION FACTOR 1 356 - -
Dod10g2144 358 MobiDBLite consensus disorder prediction 1 22 - -
Dod10g2144 358 Coils Coil 215 235 - -
Dod10g2144 358 MobiDBLite consensus disorder prediction 42 147 - -
Dod10g2144 358 Pfam Helix-loop-helix DNA-binding domain 181 226 IPR011598 GO:0046983
Dod10g2144 358 MobiDBLite consensus disorder prediction 37 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2144 Dod-Chr10 43304095 43307835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2144 172 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 52.151 1.84e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g2144 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2144 - - aprc:113856039 376.326