Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2134 ATGTCTACCAGCTGGCATGCCGCCACTACTGCCACTCCCATTTCCATAACCTCCGACGGCAACGATCCCATTCCCATCCCGAGCAGCACCGTTGAACGTGAATGGTCGTCTTCTTCTTTTTCTTCTTCTTCTTATTCTTCTTCTTCTTCGTTCTCGACTTGTGTCTACAATTTCTCCTCCGGAAACCCTAGAATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCACCACGACGATCCCTCTTCCCCTTCTCCTCCTGCTCCTGCTCTCCCCTTTGGACGCAAGCCCCTCCTCTGTGTCGTTGGAGTCCCCAATCACATGACTTACGCCGATTTCTGCCAGTTCTGCGGCTCCTTCATTCACCACATCCTCGAGATGCGCATCGTCAGAATGGATGGAATGGAGGATCAGTACAGTGTTTTGATACGCTTCGACGACCAAGACCCCGCTGACAGCTTCTACAAGCATTACAACGGCCGCCGTTTCTCCTCTCTCGAGGTGGAGGTTTGTCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGCTCAATTGAACATGCTCAACCCTCTAATGCTAGTTCTACTGAACAGCCTGCATGCCCTGTCTGCCTTGAGCGATTAGATCAAGATACGAGTGGAATTCTCACGACTATATGCAATCATTCTTTCCACAGTTCGTGTATTTCAAAATGGGCCGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTCTGTCAGACCACCGAGAACCTTTGGATATGTGTTATATGTGGATTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTATTCCATGGAAGTGGAAACTAAGCGCGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGACAATGGGTGCGGAAGTTGCAGCTGTGAAGATAATGATATGAGCGAAGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTATAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCGTTGTTACAAGAAGTAAAAGAAGAAACTGAAAGAAAAATTTCTGAAGCTGTTCATAAGGCTGTCAGGCTTAAACAGCAGAAGATTCAGACCAAGATTGAAAGATGTAATAAAGAGAAGAAATTTCTGGATGAG 1269 0.4555 MSTSWHAATTATPISITSDGNDPIPIPSSTVEREWSSSSFSSSSYSSSSSFSTCVYNFSSGNPRIEETRGLMHLFPDHHDDPSSPSPPAPALPFGRKPLLCVVGVPNHMTYADFCQFCGSFIHHILEMRIVRMDGMEDQYSVLIRFDDQDPADSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPACPVCLERLDQDTSGILTTICNHSFHSSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSMEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCVHADNGCGSCSCEDNDMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETERKISEAVHKAVRLKQQKIQTKIERCNKEKKFLDE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2134 423 PANTHER BRCA1-ASSOCIATED PROTEIN 32 422 - -
Dod10g2134 423 MobiDBLite consensus disorder prediction 1 30 - -
Dod10g2134 423 ProSiteProfiles Zinc finger UBP-type profile. 236 329 IPR001607 GO:0008270
Dod10g2134 423 Pfam Zn-finger in ubiquitin-hydrolases and other protein 253 312 IPR001607 GO:0008270
Dod10g2134 423 ProSiteProfiles Zinc finger RING-type profile. 202 242 IPR001841 -
Dod10g2134 423 SUPERFAMILY RNA-binding domain, RBD 76 172 IPR035979 GO:0003676
Dod10g2134 423 Pfam BRCA1-associated protein 2 94 189 IPR011422 -
Dod10g2134 423 Pfam Ring finger domain 201 242 IPR001841 -
Dod10g2134 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 244 IPR013083 -
Dod10g2134 423 SUPERFAMILY RING/U-box 201 245 - -
Dod10g2134 423 SMART Zf_UBP_1 252 301 IPR001607 GO:0008270
Dod10g2134 423 Coils Coil 367 405 - -
Dod10g2134 423 SUPERFAMILY RING/U-box 236 316 - -
Dod10g2134 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 322 IPR013083 -
Dod10g2134 423 SMART ring_2 202 241 IPR001841 -
Dod10g2134 423 CDD RING-H2_BRAP2 200 243 - -
Dod10g2134 423 CDD RRM_BRAP2_like 100 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2134 Dod-Chr10 43242155 43244394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2134 198 242 C3H Transcription Factor Family AT1G72220 48.936 3.71e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2134 K10632 - gmx:100794688 689.878