Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2119 ATGGAAGAAGATGATGATTACGTGGAGTACGTGCCGGTGGCGAAGCGCAGGGCCATGCAAGCACAGAACATTCTTCACCGTCATGGTAAGTCCTCTGTTTCTTCTTCTTCTTCTTCTTCGGCCTTCGTTGACGATGATTCGGAGAGAACCAGAGTGGCAGAAGCCAAACCCAGCCTTCTGTTGAAGGCTTCGCAGCTGAAAAAGGAACAGCCCGAGATAAGTGCCACTGAGCAGATTCTTCAACAGGAAAATGAGATGCTAAACAATTTGCCTGACAGAAAAACCCTATTGTCCGTTCGTGAATTGGCCAAGGGAATCACTTACTCTGACCCTTTGCCCACTGGATGGAAACCCCCTCTGCACCTGAGAAGGATGCCCAAAAGGCAAAGTGATCTGATTAGGAAACAGTGGCACATCATTGTTGATGGCGAAGACATTCCATGCCCCGTTAAGAATTTCAAGGACATGAGGTTCCCTGATCCTATTTTGAGCAAGCTGAGAGCTAAGGGGATTGTGCAACCAACTCCTATTCAGGTGCAGGGCCTTCCTGTTATTCTATCTGGAAGGGACATGATTGGAATTGCCTTCACAGGTTCAGGGAAGACTCTGGTATTTGTGCTGCCAATGATCATGTTGGCATTGCAGGAGGAGATTATGATGCCTGTTGTACCTGGAGAAGGCCCTTTTGGCTTGATTGTTTGCCCCTCAAGGGAACTTGCTAGGCAGACTTATGAAGTGGTTGAGCAGTTCTTGAAACCCCTGAGGGAAGCCGGTTATCCTGAGTTGAGGCCTTTGCTCTGCATTGGTGGGCTGGAAATGAGATCACAGGTTGATGTTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACACCTGGAAGGTTGAAGGATATGCTGGCAAAGAAGAAGATGAATCTGGATAGTTGTAGGTATTTGACTTTGGATGAGGCTGATAGGTTGGTGGATTTGGGGTTTGAGGACGATATAAGAGAGGTGTTTGATCACTTCAAAGCTCAAAGGCAAACTCTCTTGTTCTCTGCCACTATGCCAACCAAGATTCAGAATTTTGCTAGGAGTGCTTTGGTGAAGCCTGTTATTGTCAATGTGGGAAGGGCAGGGGCAGCAAATCTTGATGTGGTTCAGGAGGTAGAGTATGTCAAGCAAGAGGCCAAAATAGTGTATCTGCTTGAGTGCCTTCAGAAAACGCCACCACCTGTTTTGGTGTTCTGTGAAAACAAGGCTGATGTGGATGAAATTCACGAGTATCTTCTCATGAAAGGAGTGGAAGCAGTGGCTGTTCATGGAGGCAAGGATCAGGAAGAGCGCGAGTACGCCATTGCAGCTTTTAAATCCGGGAAGAAAGATGTGTTGGTGGCAACTGATATTGCATCCAAGGGTTTGGATTTTCCTGATATTCAGCATGTTATCAACTATGACATGCCAGCTGAGATTGAAAATTATGTGCATAGGATTGGAAGGACTGGAAGATGTGGCAGGACTGGCATAGCCACAACTTTTATAAACAAGAATCAAAGTGAGACAACACTGCTTGATCTGAAACACCTCTTGCAAGAAGCTAAACAGAGGATTCCTCCAGTTTTGGCTGATTTGAATGATCCAATGGAAGATAACGATAGAATTACTGACAAAAGTGGTGTCAAGGGATGTGCATATTGTGGGGGGCTTGGTCATCGCATCCGGGATTGTCCGAAATTTGAACATCAGAAGAGCATGGCAATTGCTAATAGCAGCAGAAAGGATTATTTTGGATCTGGTGGTTACAAGGGAGAAATTTGA 1794 0.4582 MEEDDDYVEYVPVAKRRAMQAQNILHRHGKSSVSSSSSSSAFVDDDSERTRVAEAKPSLLLKASQLKKEQPEISATEQILQQENEMLNNLPDRKTLLSVRELAKGITYSDPLPTGWKPPLHLRRMPKRQSDLIRKQWHIIVDGEDIPCPVKNFKDMRFPDPILSKLRAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPVVPGEGPFGLIVCPSRELARQTYEVVEQFLKPLREAGYPELRPLLCIGGLEMRSQVDVVKKGVHIVVATPGRLKDMLAKKKMNLDSCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVVQEVEYVKQEAKIVYLLECLQKTPPPVLVFCENKADVDEIHEYLLMKGVEAVAVHGGKDQEEREYAIAAFKSGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGRTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLADLNDPMEDNDRITDKSGVKGCAYCGGLGHRIRDCPKFEHQKSMAIANSSRKDYFGSGGYKGEI* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2119 597 SMART c2hcfinal6 554 570 IPR001878 GO:0003676|GO:0008270
Dod10g2119 597 MobiDBLite consensus disorder prediction 25 49 - -
Dod10g2119 597 Pfam DEAD/DEAH box helicase 175 354 IPR011545 GO:0003676|GO:0005524
Dod10g2119 597 Gene3D - 376 538 IPR027417 -
Dod10g2119 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 537 IPR001650 -
Dod10g2119 597 SMART helicmild6 416 497 IPR001650 -
Dod10g2119 597 Coils Coil 508 528 - -
Dod10g2119 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Dod10g2119 597 SUPERFAMILY Retrovirus zinc finger-like domains 554 575 IPR036875 GO:0003676|GO:0008270
Dod10g2119 597 CDD SF2_C_DEAD 378 506 - -
Dod10g2119 597 Pfam Zinc knuckle 554 570 IPR001878 GO:0003676|GO:0008270
Dod10g2119 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 512 IPR027417 -
Dod10g2119 597 MobiDBLite consensus disorder prediction 25 43 - -
Dod10g2119 597 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 576 - -
Dod10g2119 597 ProSiteProfiles Zinc finger CCHC-type profile. 555 570 IPR001878 GO:0003676|GO:0008270
Dod10g2119 597 Gene3D - 119 370 IPR027417 -
Dod10g2119 597 Pfam Helicase conserved C-terminal domain 390 497 IPR001650 -
Dod10g2119 597 SMART ultradead3 170 381 IPR014001 -
Dod10g2119 597 CDD DEADc_DDX41 162 367 IPR044113 GO:0000398|GO:0003724|GO:0005524
Dod10g2119 597 PANTHER BNAA06G38640D PROTEIN 8 576 - -
Dod10g2119 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2119 Dod-Chr10 43065237 43067806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2119 152 536 Eukaryotic Initiation Factors Gene Family AT1G72730 30.670 7.39e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2119 K13116 - gmx:100819984 1053.89