Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2106 ATGTCCGATTCGGGCGTGCCATCCACCCTAGTAGACGGGCCACAAACCGGGTTTTCCATGAAGCAAGACGGCGCCCGAACCGACACCCGGGAGCAAGCAGCCGTGTACGACATCATGCGTGCCACCGGGAACGACTGGGCCACCGACATCCCCGACGTGTGCCGCGGTCGGTGGCACGGCATCGAGTGCATGCCCGACAAGGACAACGTGTACCACGTTGTGTCCCTTTCCTTCGGTGCTCTCTCCGACGACACCGCTTTCCCAACCTGCGACCGGACCCGCTCCACCGTCTCTCCATCCATCACCAACCTGCCTCACCTCCGGACCCTCTTCTTTTTCCGTTGCTTCACTCGCAACCCCCAGCCCATTCCCCACTTCTTGGGCCAGCTGGGCCCATCCTTGCAAACGTTGGTTCTCAGAGAAAATGGCCACGTGGGCCCAATCCCTGACGAGCTCGGCAACCTCGCCCGTTTGATGGTCCTCGATCTTCACAAAAACAACCTCAACGGTTCTATTCCGGTCTCTTTGGGCCGGATCACCGGTCTAAGGTCCTTGGACCTGAGTGGCAACAAATTAACCGGTTCGATACCCGGTTTAAGTTTCCCCGGTTTGAACGTATTGGACATGAGCCAGAACCTTCTAACGGGCCCAATCCCTTCCACCCTTGGGGAGTGCCACTCTCTGATCAAATTGGATTTTAGTCGAAACAGGCTCGTTGGCCCGTTACCGGAGAGAATCACGGGCCTTAAAGAGCTAATGCTTTTGGATTTGAGCTTTAATCGAATTCAAGGCCCATTTTCAATGTCGCTCAGAAGCCTGGGCTCTCTTCAGGCCTTGATCCTAAAGGGAAACCCAATGGGCCCAGCAATTATATCTAGTGATGCATTTGACGGTATGAAGGGATTAATGATCTTAATTATGTCGAGTATGAATTTGCATGGTCCGGTGCCAGAATCACTAGGCAGATTACCGAACCTTCGTGTGCTTCATCTTGATGGGAATCACCTTAATGGGTCAATCCCGAAAAGCTTCAGAGATTTGAGAAACCTTAGTGAATTGAGGCTGAATGATAATAACCTGAGTGGGTCGGTCCCATTTGGAAGGGAAATGGTTTGGAGGATGAAAAGGAAGCTAAGGCTGTATAATAATTCAGGGCTTTGCTATGATGCAAGAAGTGGTTTAGGGGATAGTGTGGACTCCACCTTTGATTTTGGTATTGGTTTATGTGAGAGTTCAAGCCCGGGTTCGGGCAGGACAGTGCAACATCTTTCGACCAATGAAAAGCCCGTGCCAACAGCTAGGGTTATGAATGCCTCATCGGATGCTGCTGCAGCTATGTCAGTATCTCTGGAAGCACTTACGGTGGCTCTGGGACTAGCTACTTGTAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACATTCAGCTACAAATAATTTCAACTATGATAACAAGCTCGGCGAAGGAGGATTCGGGAGTGTCTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTGCGACACAAGAGTCTTCTGAGTCTACGTGGCTATTGCGCTGAAGGTCAGGAACGGTTAATTGTATATGACTACATGCCAAATTTGAGCCTGCTCTCCCATCTTCATGGGCAGCACTCAGCAGAATGTCTTCTTGATTGGAATCGACGGATGGATATTGCAATTGGATCTGCTGAAGGAATTGCATATCTTCACCACCAAGCAACACCACATATCATTCACAGAGATATTAAGGCAAGCAATGTGTTGTTGGATTCAGATTTCCAAGCACGAGTTGCTGATTTTGGTTTTGCCAAGTTGATCCCTGATGGGGCAACACATGTGACTACTAGAGTTAAGGGTACCCTTGGCTACCTTGCACCGGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGAATCCTCCTTCTAGAACTCGCCAGTGGCAGAAAACCACTTGAAAAACTCAGCAATGCAGTGAAGCGATCGATAAGTGATTGGGCACTGCCACTGGTTTGTGAGAAGAAATTTAGTGAGCTTGCAGATCCAAGACTAAATGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTGTTTTGGTTGCTCTTATGTGTGCTCAGAGTCAAGCTGAGAAAAGACCAACCATGCTTGAGGTGGTAGAGCTATTGAAGGGAGAATCAAAAGATAATCTTTCTCAGTTGGAGAACAATGACCTCTTTAACAGCCCTCCAGCTGTTGGACTTGATGATGGAACATCAGTAGCTGAAGGCAGTTCAGACTTCATCTCAGAAGAGAAGGAATCAAAACATGAATTAGAAGAGACTACAAGGCCTTGA 2427 0.4825 MSDSGVPSTLVDGPQTGFSMKQDGARTDTREQAAVYDIMRATGNDWATDIPDVCRGRWHGIECMPDKDNVYHVVSLSFGALSDDTAFPTCDRTRSTVSPSITNLPHLRTLFFFRCFTRNPQPIPHFLGQLGPSLQTLVLRENGHVGPIPDELGNLARLMVLDLHKNNLNGSIPVSLGRITGLRSLDLSGNKLTGSIPGLSFPGLNVLDMSQNLLTGPIPSTLGECHSLIKLDFSRNRLVGPLPERITGLKELMLLDLSFNRIQGPFSMSLRSLGSLQALILKGNPMGPAIISSDAFDGMKGLMILIMSSMNLHGPVPESLGRLPNLRVLHLDGNHLNGSIPKSFRDLRNLSELRLNDNNLSGSVPFGREMVWRMKRKLRLYNNSGLCYDARSGLGDSVDSTFDFGIGLCESSSPGSGRTVQHLSTNEKPVPTARVMNASSDAAAAMSVSLEALTVALGLATCKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKSLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWNRRMDIAIGSAEGIAYLHHQATPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGRKPLEKLSNAVKRSISDWALPLVCEKKFSELADPRLNGNYVEEELKRVVLVALMCAQSQAEKRPTMLEVVELLKGESKDNLSQLENNDLFNSPPAVGLDDGTSVAEGSSDFISEEKESKHELEETTRP* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2106 808 SMART LRR_typ_2 273 298 IPR003591 -
Dod10g2106 808 SMART LRR_typ_2 179 203 IPR003591 -
Dod10g2106 808 SMART LRR_typ_2 347 368 IPR003591 -
Dod10g2106 808 SMART LRR_typ_2 323 346 IPR003591 -
Dod10g2106 808 ProSiteProfiles Leucine-rich repeat profile. 181 203 IPR001611 GO:0005515
Dod10g2106 808 PRINTS Leucine-rich repeat signature 249 262 - -
Dod10g2106 808 PRINTS Leucine-rich repeat signature 182 195 - -
Dod10g2106 808 SUPERFAMILY Protein kinase-like (PK-like) 463 753 IPR011009 -
Dod10g2106 808 CDD STKc_IRAK 488 755 - -
Dod10g2106 808 Pfam Protein kinase domain 483 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g2106 808 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Dod10g2106 808 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Dod10g2106 808 Gene3D Transferase(Phosphotransferase) domain 1 558 770 - -
Dod10g2106 808 Gene3D Ribonuclease Inhibitor 32 198 IPR032675 -
Dod10g2106 808 Gene3D Ribonuclease Inhibitor 294 392 IPR032675 -
Dod10g2106 808 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 43 366 - -
Dod10g2106 808 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 99 755 - -
Dod10g2106 808 SMART serkin_6 482 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g2106 808 ProSiteProfiles Protein kinase domain profile. 482 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g2106 808 MobiDBLite consensus disorder prediction 1 23 - -
Dod10g2106 808 MobiDBLite consensus disorder prediction 1 26 - -
Dod10g2106 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Dod10g2106 808 SUPERFAMILY L domain-like 52 390 - -
Dod10g2106 808 MobiDBLite consensus disorder prediction 790 808 - -
Dod10g2106 808 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Dod10g2106 808 Coils Coil 747 767 - -
Dod10g2106 808 Gene3D Phosphorylase Kinase; domain 1 446 557 - -
Dod10g2106 808 MobiDBLite consensus disorder prediction 764 808 - -
Dod10g2106 808 Gene3D Ribonuclease Inhibitor 199 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2106 Dod-Chr10 42942233 42950970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2106 146 754 Receptor kinase-like Gene Family AT5G07280 35.873 7.00e-106 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Dod10g2106 Pkinase 7.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2106 - - aprc:113856035 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2106 10 42942233 42950970 Dod10g2106 10 42942233 42950970 ECH
Dod10g2106 10 42942233 42950970 Dod06g2486 06 53854069 53855654 PCT