Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2096 ATGGTGCAATCGAAGAAATTCAGAGGGGTCAGGCAACGCCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGTTAGGGACATTTGAAACTGCAGAAGCAGCAGCAAGAGCATATGATGAAGCAGCCATTCTGATGAGTGGAAGGAACGCCAAAACAAACTTCCCAGTTGTGGAGAACCAAACGGGGAATCATCACATTTCAACTTCTTCTTCATCTTCCACAACATTCGCTGCTGTTCTCAGTGCAAAGCTGAGGAAGTGCTGCAAGTCACCTTCACCTTCCCTCACTTGCCTGAGGCTCGACACGGAGAATTCGCACATTGGGGTGTGGCAGAAGCGCGCAGGGCCTCGCTCCGAATCAAACTGGATCATGATGGTTGAGTTGGAAAAGAAGAAGAACAAGAACGACCACCTTGGAGCTTGTTGTTCTGCTTCTGATTCAGTTTTTCCAGAGCCACACACTATGCCAGAGAAGGTGAAACCAGAGGAGAATAATGGCTTGGATGAGGAGCAGAGGATTGCCCTGCAGATGATTGAGGAGCTTCTGGATAGGAACTAA 582 0.488 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMSGRNAKTNFPVVENQTGNHHISTSSSSSTTFAAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSESNWIMMVELEKKKNKNDHLGACCSASDSVFPEPHTMPEKVKPEENNGLDEEQRIALQMIEELLDRN* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2096 193 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Dod10g2096 193 MobiDBLite consensus disorder prediction 153 173 - -
Dod10g2096 193 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Dod10g2096 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 193 - -
Dod10g2096 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 193 - -
Dod10g2096 193 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Dod10g2096 193 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Dod10g2096 193 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Dod10g2096 193 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Dod10g2096 193 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Dod10g2096 193 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2096 Dod-Chr10 42829050 42829878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2096 1 193 AP2-EREBP Transcription Factor Family AT1G15360 61.576 2.19e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod10g2096 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2096 - - gmx:100796962 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2096 10 42829050 42829878 Dod10g2096 10 42829050 42829878 ECH