Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2078 ATGGAGGAGACACAGCCGAATTCGAAGAAGCCGAGAATAATGTGGGAAACAGGAAGAGGAACAGCCCCCCCAACTGGAAGAAGCAGCTACAAGACACAGCTATGCAGGAGGTTCATGGAGGGTGCCTGCCCTCTTGGCTCCAAATGCACCTACGCTCATGGCGTTGCTGACCTTAGACGCAGCAACCATCTGCATCATCAAGAACCCAAGCTCTGCAGAATGTTCTCTTTTAACAAACACTGCACCTATGGCCACAATTGTCGCTTCCTTCATTCCATTTCATCATCATTTTCAACACACACACCACCACAACTTCATCATCAATTCAACTATGCCCCTTTTGATCCTCATGCTCATCCCCAACCTCAACAAGGAGGAGGAGGGAAACATGAGGGCTACTCTTCTGCAGAATACAGGGCAATGCAAACTTTTACTGCTGCTGCAAATGCCTCAACCAGCACTGTGGCAACTAGCTCTTTGCACAAGAATGAACAACCTTATAGAGTGAAGTTCATATTCAAGGAAAATGAACTGCGAAAAATCAGCGGCATCTATGCCGACTGGATTTGA 570 0.4719 MEETQPNSKKPRIMWETGRGTAPPTGRSSYKTQLCRRFMEGACPLGSKCTYAHGVADLRRSNHLHHQEPKLCRMFSFNKHCTYGHNCRFLHSISSSFSTHTPPQLHHQFNYAPFDPHAHPQPQQGGGGKHEGYSSAEYRAMQTFTAAANASTSTVATSSLHKNEQPYRVKFIFKENELRKISGIYADWI* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2078 189 Gene3D - 69 95 - -
Dod10g2078 189 Gene3D - 25 62 - -
Dod10g2078 189 Pfam RNA-binding, Nab2-type zinc finger 72 91 - -
Dod10g2078 189 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 27 188 - -
Dod10g2078 189 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 54 IPR000571 GO:0046872
Dod10g2078 189 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 188 IPR045877 GO:0003729
Dod10g2078 189 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Dod10g2078 189 SMART c3hfinal6 68 93 IPR000571 GO:0046872
Dod10g2078 189 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Dod10g2078 189 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Dod10g2078 189 MobiDBLite consensus disorder prediction 110 133 - -
Dod10g2078 189 SUPERFAMILY CCCH zinc finger 68 94 IPR036855 GO:0046872
Dod10g2078 189 SUPERFAMILY CCCH zinc finger 28 59 IPR036855 GO:0046872
Dod10g2078 189 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2078 31 94 C3H Transcription Factor Family AT1G68200 41.538 1.15e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod10g2078 zf-CCCH 5.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2078 - - cam:101493245 153.68