Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2054 ATGAGTGGAGCTTCGTTAGCAGGGTTGCAAGACCACCTCAAATTGGCGCGAGAATACGCCCTCGAAGGACTCTACGACACCTCCATCATTTTCTTCGACGGCGCCGTTGCACAGATCAACAAGCACCTGAACAGTGTTGAAGATCCTTTAATCCGTGCGAAATGGATGAACGTGAAGAAAGCGCTGTCGGAGGAAACGGAAGTGGTGAAGCAACTTGATGCGGAGAGAAGGGCATTTAAGGAAACCCCTATCGGAGGTGGTGGTGGAGGAAGGAGACGCCCTACCTCGCCTCCGATTTCGACCAAATCCTCCTTTGTTTTTCAGCCGTTGGATGAGTATCCCACTTCTTCATCGAGCGGTCCTGGTCCCATGGACGATCCCGATGTGTGGAGGCCGCCCAGTCGAGATGCTACAACGGCTGGGAGTAGAAGGCCCGCCGCTAGGCCCACTCGCAAGTCTCCTCAGGATGGGGCTTGGGCCCGTGGGTCCACCAGGCCCGCTGCAAGTGGTCGCGGTGCAAAGGTTGGCGCTACTAGTAGGGTTAATTCTGGAGCCCGAACTTCAACAGCTGCAAAGAAAGGCACCGGAAAGTCTAGCAAAGCAGATTCAGTTAATGGTGATGGTGATGAAGGGAAGTCGAAGAAGGGGCAATACGAAGGCCCTGATCCTGACTTGGCTGAGATGCTTGAAAGGGACGTGTTGGAGACCTCTCCTGGTGTGAGATGGGATGATGTTGCTGGCCTTACTGAAGCCAAAAGGCTTCTTGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGTACTGGGAAGACTCTTCTTGCTAAAGCAGTTGCTACCGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGCGAGAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCGCCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGTAATGCTCGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTTTGGTTCAGGTTGATGGTGTGAACAATAGTTCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACCAACTTTCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCGAATTTTGAGAGTCGTAAGGAGCTGATTCGTATCAATTTGAAGACTGTAGAGGTGGCCCCTGATGTCAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGAGATGATTTGACAAATGTATGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCTGGAAAGACACGTGATGAGATCAAGAACATGCCCAAGGATGAGATCTCAAAGGATCCTGTTGCTATGTGCGATTTTGAAGAAGCCTTGAAGAAAGTCCAACGAAGTGTTTCGCAGGCTGACATTGAACGCCATGAGAAGTGGTTTACTGAATTTGGATCAGCATAA 1584 0.4912 MSGASLAGLQDHLKLAREYALEGLYDTSIIFFDGAVAQINKHLNSVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKETPIGGGGGGRRRPTSPPISTKSSFVFQPLDEYPTSSSSGPGPMDDPDVWRPPSRDATTAGSRRPAARPTRKSPQDGAWARGSTRPAASGRGAKVGATSRVNSGARTSTAAKKGTGKSSKADSVNGDGDEGKSKKGQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVQRSVSQADIERHEKWFTEFGSA* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2054 527 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 527 IPR028596 GO:0008017|GO:0008568|GO:0051013
Dod10g2054 527 SMART AAA_5 275 418 IPR003593 -
Dod10g2054 527 Pfam AAA+ lid domain 438 479 IPR041569 -
Dod10g2054 527 MobiDBLite consensus disorder prediction 96 122 - -
Dod10g2054 527 MobiDBLite consensus disorder prediction 78 223 - -
Dod10g2054 527 Pfam ATPase family associated with various cellular activities (AAA) 279 416 IPR003959 GO:0005524|GO:0016887
Dod10g2054 527 PANTHER AAA DOMAIN-CONTAINING 4 527 - -
Dod10g2054 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Dod10g2054 527 MobiDBLite consensus disorder prediction 180 202 - -
Dod10g2054 527 Gene3D - 237 518 IPR027417 -
Dod10g2054 527 ProSitePatterns AAA-protein family signature. 388 407 IPR003960 GO:0005524|GO:0016887
Dod10g2054 527 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 527 - -
Dod10g2054 527 Gene3D - 417 503 - -
Dod10g2054 527 CDD AAA 273 416 - -
Dod10g2054 527 Gene3D - 3 80 - -
Dod10g2054 527 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2054 Dod-Chr10 42439303 42442795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2054 231 519 Calmodulin-binding Proteins AT3G56690 40.339 6.65e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2054 K07767 - gmx:100787634 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2054 10 42439303 42442795 Dod10g2054 10 42439303 42442795 ECH