Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2042 ATGCTATCTGTCCTCCGCGCAATGTCACTGCAAAGAAGAGAAAGTGGCGGCAATGGCAGCATCCTCTACGACGACGACCTCGACATGAATGATATTGAGCTCAGCCTCTCCCTTCCAGGAACCAAAACCGGCACAAAACGTTGCTTCTCGGACACCGTTGATCTTCATCTCGGTGACTCATCAACCGGTGCAAATAATGAATTCTCGTCCTCCACCTCTAAACCCCCGGCATCCAAGGCACAAGTGGTGGGTTGGCCGCCGCTGAGAGCGAACAGGAAGAACGCGATGAAGAGTAGCAAATATGTGAAGGTAGCTGTTGATGGAGCTCCATATCTAAGAAAAGTTGATCTTGAAATGTACGAGAGTTATGAGCAGCTGCTGAGGGCATTGGGGTCGATGTTTAGTTTCTCAACCATTCGTAATCATTTGAATGAGAGAAAACTCATGGACCCTCGAAATGGTACTAAGTACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGGATGATGATCAAATCAGAGGCCGTCCGTTTAGGTCCGAGGACGGCTTCAAAGAGTACGGGCTCCAGTTAG 630 0.4841 MLSVLRAMSLQRRESGGNGSILYDDDLDMNDIELSLSLPGTKTGTKRCFSDTVDLHLGDSSTGANNEFSSSTSKPPASKAQVVGWPPLRANRKNAMKSSKYVKVAVDGAPYLRKVDLEMYESYEQLLRALGSMFSFSTIRNHLNERKLMDPRNGTKYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRMMIKSEAVRLGPRTASKSTGSS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2042 209 MobiDBLite consensus disorder prediction 60 81 - -
Dod10g2042 209 Gene3D - 93 203 - -
Dod10g2042 209 PANTHER AUXIN-RESPONSIVE PROTEIN 28 195 - -
Dod10g2042 209 Pfam AUX/IAA family 40 200 IPR033389 -
Dod10g2042 209 ProSiteProfiles PB1 domain profile. 99 193 IPR000270 GO:0005515
Dod10g2042 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 195 IPR003311 GO:0005634|GO:0006355
Dod10g2042 209 MobiDBLite consensus disorder prediction 60 78 - -
Dod10g2042 209 SUPERFAMILY CAD & PB1 domains 92 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2042 Dod-Chr10 42208258 42210458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2042 102 203 B3 DNA Binding Superfamily AT5G62000 32.353 2.88e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod10g2042 AUX_IAA 7.5e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2042 K14484 - ming:122075615 243.817