Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2041 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTAAGGTTGGGACTTCCCGGTGGTGAACCAACATGTGTAGTTGGCAAGAATAATGAGAAGAAGAAGAGGGTCTTCTCGGAGATTGACGGCGGCGACCAAATCAGCTCCACCGATGACCGGAAAATGCCGACGAAGAACCAAGTGGTGGGGTGGCCTCCGGTGTGCTCGTACCGTAAGAAGAGCAGCATGAATGAGGCCTCAAAAATGTACGTCAAAGTTAGCATGGATGGGGCTCCATTCTTGCGTAAAATTGATTTAGGCATGCATAAGGGGTACTCTGAGTTAGCCTTGGCCTTGGAGGAGCTCTTTGGTTGCTATGGAATCGGCGAGGCGTTGAAGGATGCGGACAACGGTGAGCAAGTTCCCATTTACGAGGACAAAGACGGTGACTGGATGCTGGTAGGAGATGTCCCTTGGGAGTAA 459 0.5098 MAKEGLGLEITELRLGLPGGEPTCVVGKNNEKKKRVFSEIDGGDQISSTDDRKMPTKNQVVGWPPVCSYRKKSSMNEASKMYVKVSMDGAPFLRKIDLGMHKGYSELALALEELFGCYGIGEALKDADNGEQVPIYEDKDGDWMLVGDVPWE* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2041 152 ProSiteProfiles PB1 domain profile. 80 152 IPR000270 GO:0005515
Dod10g2041 152 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 152 - -
Dod10g2041 152 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 152 IPR003311 GO:0005634|GO:0006355
Dod10g2041 152 Gene3D - 74 152 - -
Dod10g2041 152 SUPERFAMILY CAD & PB1 domains 71 152 - -
Dod10g2041 152 Pfam AUX/IAA family 42 152 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2041 Dod-Chr10 42193370 42196774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2041 6 151 B3 DNA Binding Superfamily AT4G23980 31.507 2.35e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Dod10g2041 AUX_IAA 4.2e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2041 K14484 - gmx:100811879 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2041 10 42193370 42196774 Dod10g2041 10 42193370 42196774 ECH
Dod06g2542 06 54523597 54528352 Dod10g2041 10 42193370 42196774 PCT