Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g2040 ATGGATGTTATCTCTCCGGGACCAATTAGCAACACACAAACTGACCAACATCCTTTGCTGATGGAGCAGCCAGAAACTCATAATGGTCATCAGCACATAATTGACATTGCAAGGAACAGTGAAGCTTTATCTACAGCATCTCATAATGATCAAAACTCTGAAATGCTTTTACCACAGAATGAAGATCAACAGGCTGGGGGCACACAAGACGCTGCTTATCAAACCTCTTCATCTACAGCACCCAGATTAAACTCTAGAAATTCCTCATCGGTGAGAAGAGGTGATGGGTATGGTCATCGCAGAAGGAGCCCATTGAATTCTGGATTATGGATTTCTGTTGAGCTTGTTGTCACTTTGGGTCAGATAATAGCATCTATCGTGGTCTTGTCATTGTCAAGGAATGAAAATCCCCAAGCTCCATTGTTTGTGTGGGTTGTAGGTTATGCATCTGGTTGTGCCGCTACGCTTCCTATTCTTTACTGGCGTTTTCGAAACTGTAATCAAAGCACTGAACACAATAATTCTCAATCATCTCCAGGATCTTCTGGAGGCGATCCTCAAGAACCTACTCCTTATACTGCCGTCTCCATTGCTCGCGTTTCAGACGAGGAGAATGGTCATGCCTCAGAATCAGCCACAGCAAACTCTATAATTCCAGTGGCCTTTAGTTCTAGGCTTAATGGATTAGTAGACCACTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTGTGGATCTTTGGAGGTCACTCTTCTCCTGCTGATGCTCCACAATTGTATAGGTTATGTATAGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTCCCTTGCATAATTTCTGTCTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACACCAGAATCTATTAATGCTCTACCAATCTACAAGTTCAAATTGAAGAGCAATGGAAATGGTGATGATCACGATGTCAATGCAGCTATAGATGAAGGAGGGATTTTGGCCGCAGGGACAGAAATGGAGCGTGTGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGTTACCCTGCTCTCACGTCTTTCACTTGGAGTGTGTTGACAAATGGTTGAAGATGAATGCATCCTGCCCTCTTTGTAAGAGTGAAGTTGGTATGGGTGGTGGAGGGTCACCTTCATCATGGGACTTGCACTAG 1275 0.4329 MDVISPGPISNTQTDQHPLLMEQPETHNGHQHIIDIARNSEALSTASHNDQNSEMLLPQNEDQQAGGTQDAAYQTSSSTAPRLNSRNSSSVRRGDGYGHRRRSPLNSGLWISVELVVTLGQIIASIVVLSLSRNENPQAPLFVWVVGYASGCAATLPILYWRFRNCNQSTEHNNSQSSPGSSGGDPQEPTPYTAVSIARVSDEENGHASESATANSIIPVAFSSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPADAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATPESINALPIYKFKLKSNGNGDDHDVNAAIDEGGILAAGTEMERVISGEDAVCCICLAKYADDDELRELPCSHVFHLECVDKWLKMNASCPLCKSEVGMGGGGSPSSWDLH* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g2040 424 MobiDBLite consensus disorder prediction 61 100 - -
Dod10g2040 424 Pfam Ring finger domain 366 407 IPR001841 -
Dod10g2040 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 412 IPR013083 -
Dod10g2040 424 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Dod10g2040 424 SUPERFAMILY RING/U-box 356 412 - -
Dod10g2040 424 SMART ringv_2 365 407 IPR011016 GO:0008270
Dod10g2040 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 11 420 - -
Dod10g2040 424 CDD RING-H2_RNF111_like 365 407 - -
Dod10g2040 424 MobiDBLite consensus disorder prediction 61 92 - -
Dod10g2040 424 PANTHER PROTEIN, PUTATIVE-RELATED 11 420 - -
Dod10g2040 424 SMART ring_2 366 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g2040 Dod-Chr10 42164251 42167728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g2040 10 417 C3H Transcription Factor Family AT1G80400 58.151 1.08e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g2040 - - gmx:100819729 700.279