LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g1991	ATGTCGTGGTTTACTAAGAACAATACGTGGGGGAACTTCCCTGATTTGGCGGGAGCTGTCAATAAGCTTCAGGAGAGTGTCAAGAACATCGAGAAGAATTTCGACACTGCTCTTGGCTTTGAGGAGAAATCTGAATCCAGCAATGAAGGTGCAGGTGCAGGATCATGGCCTATACCCACAGACAGGAAAACCCTATTCAATCCTGTTATGGCCTTCATAGGGAACAAAAATGAGGAAACTAGTGAAGAAATGTCTGAGAAAGCTGAATCCGCTCAACAAGGATCTGAATCTGGAAAGTCGCTGGAAAAACCCGAGTTCCCTGATCATACACCCCAGCATGAGGGAAAAGAAGGCTTAGAGACTGATGACACAGTCCAAACAGAGACTGAGGAGATCGCTATTCAAAATGAAAATAGAGTGACCAAGGTAGAAGACAATGTTGAGCAGACAGAGCAGGCAGAAGGATCAGCTGCTCAGAATTTGGACCATGGAAAGGAAGAACACCACTTACAGGAGATGCCTGCTGATTTGCCTGAATCCCCCATTAAGAAGTTTGAGAGTTCAGATTCTGTTGGCAGTCCTCAAGAGAAAGAGGTTGCTGAAGTGGGAACCTCTGAAAGTCCAGTGTTGATGCAACTCAAGCCTTGCAATCTTCAGGACAATGTAGCTGAGGATAGTAACAGTAACAGTGAGCCTGGTGAGTCACATGCTATCAGTGATCTGCATGAAAATTTTCAAGTCTTGACAAAGGAGGAGAATAAAGAAGAAGAGAGAGTGCAAGCAGAAGAAAGTTTAGAGAGAGTTTCTTCTGTTCAACCTGAGGCATCCAATGATAGTGAGGAAAGAGATCCGACTGACACATCTGTTCTGCATTTTGCGGCTACTGAGGAAATCAATAGCAATGATCAATCATATAATGAACCCTTGTCCAGTGCTACTCCGCCAAATGATTGTTCTGAGGTGGTATCTGAATTGGTTTTGCCTGAAAATGAAACAACTGTTAAAGAAAATGAAAGGGACCACGTAGCTAATGTGGTTGAAACTGAAACGAAAGAGCAGCATTTGAGTTCTGTAAGAAATATGTCTGACTCGGATTCCATACTTGAATTGGAGAGGGTAAAGAGGGAGATGAAAATGATGGAAGCTTCATTACAAGGTGCTGCAAGACAAGCTCAGGCGAAAGCTGATGAGATTGCAAAGTTAATGAATGAAAATGAACAATTAAAAGCTGTGATTGAGGATTTGAAGAGAAAATCCAATGAGGCAGAAGTTGAATCTTTGCGAGAGGAATACCATCAGAGGGTTGCAACACTTGAGAGAAAGATTTATGCTCTCACCAAGGAAAGGGATACTCTTCGTCGAGAGCAGAGTAAAAAGAGTGATGCAGCTGCTCTCTTGAAGGAAAAGGATGAAATAATTAATCAAGTTATGGCAGAAGGTGAAGAACTTTCCAAAAAGCAGGCTGCTCAAGAATCTACAATTAGGAAACTAAGGGCTCAGATTAGAGAGTTTGAGGAGGAGAAGAAAGGTTTGACTACAAAACTACAGGTAGAGGAGAATAAGGTTGAAAGCATCAAGAGGGACAAGGCAGCTACAGAGAAGTTGTTGCAAGAAACTATAGAAAAACATCAAACAGAACTTGGAACACAGAAAGAATATTATACTAATGCTTTGGCTGCTGCTAAGGAGGCTGAAGCATTAGCAGAGGCACGCGCCAACACTGAAGCAAGAACAGAGCTAGAGACTCGATTAAGAGAAGCTGAGGAACGTGAATCTATGCTGGTCCAGGCACTTGAAGAATTGAGGCAAACATTAAGTAGAAAGGAGCAGCAGGCGGTCTTCAAAGAAGACATGCTTCGGAGAGACATTGAGGATCTTCAAAAACGTTATCAGGCAAGTGAAAGGCGGTGTGAGGAACTGATTACACAAGTTCCAGAATCCACAAGGCCACTTTTAAGGCAAATTGAAGCCATGCAGGAAACAAATGCCAGAAAGGCTGAAGCTTGGGCTGCTGTTGAAAGATCTCTCAATTCTCGGCTTCAGGAAGCAGAGGCTAAAGCTGCAACTGCTGAGGAAAGAGAGCGATCAGTGAATGAACGCTTATCTCAAACCTTGTCTCGAATTAATGTCCTTGAGGCTCAGATTTCATGTCTTAGAGCAGAACAGACTCAGTTAAGTAGGACCCTTGAAAAGGAGAGACAAAGGGCTGCTGAAAGTAGACAGGAATACCTCGCAGCAAAGGAGGAAGCTGACACTCAAGAAGGTCGTGTGAGACAGCTTGAGGAACAAATTAAAGACATTAAGCAGAGACATAAGCAAGAGTTACAGGAGGCATTGATGCATAGGGAGCTTCTTCAACAGGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAGGACTGCTCGTGTTCATTCAGCTGCATTGTCAGATCAAATGCCCACAACAAAGCTAACTACTGCTTTTGAGAATGGGAACCTGTCTCGAAAACTCTCTAGTGCAAGCTCCCTGGGAAGCTTGGAAGAAAGCCACTTTCTGCAAGCATCATTGGATTCATCAGACAGTTTTTCTGATAGGAGAAACCCTGGAGAATTAAGCATGAGTCCTTACTATATGAAGAGCATGACGCCCAGTTCTTTTGAAGCTGCACTTCGTCAGAAGGAGGGTGAACTTGCTTCATACATGTCACGTTTGGCTTCCTTGGAATCTATCCGTGATTCTCTTGCTGAGGAGTTGGTCAAAATGACAGAACAGTGTGAAAAGTTGCGTGGGGAGGCTGCTGTGTTACCTGGCTTAAAATCAGAGCTAGAAGCACTGAGGAGGAGGCACTCTGCTGCTTTGGAGTTGATGGGCGAACGTGATGAGGAGTTGGAGGAACTTCGTGCGGATATTGTTGACTTGAAGGAAATGTACAGAGAACAAGTCAACTTGCTTGTAAATAAGATCCAGATAATGAGTTCATCAATGGGCAACCCATAA	2982	0.4366	MSWFTKNNTWGNFPDLAGAVNKLQESVKNIEKNFDTALGFEEKSESSNEGAGAGSWPIPTDRKTLFNPVMAFIGNKNEETSEEMSEKAESAQQGSESGKSLEKPEFPDHTPQHEGKEGLETDDTVQTETEEIAIQNENRVTKVEDNVEQTEQAEGSAAQNLDHGKEEHHLQEMPADLPESPIKKFESSDSVGSPQEKEVAEVGTSESPVLMQLKPCNLQDNVAEDSNSNSEPGESHAISDLHENFQVLTKEENKEEERVQAEESLERVSSVQPEASNDSEERDPTDTSVLHFAATEEINSNDQSYNEPLSSATPPNDCSEVVSELVLPENETTVKENERDHVANVVETETKEQHLSSVRNMSDSDSILELERVKREMKMMEASLQGAARQAQAKADEIAKLMNENEQLKAVIEDLKRKSNEAEVESLREEYHQRVATLERKIYALTKERDTLRREQSKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQESTIRKLRAQIREFEEEKKGLTTKLQVEENKVESIKRDKAATEKLLQETIEKHQTELGTQKEYYTNALAAAKEAEALAEARANTEARTELETRLREAEERESMLVQALEELRQTLSRKEQQAVFKEDMLRRDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETNARKAEAWAAVERSLNSRLQEAEAKAATAEERERSVNERLSQTLSRINVLEAQISCLRAEQTQLSRTLEKERQRAAESRQEYLAAKEEADTQEGRVRQLEEQIKDIKQRHKQELQEALMHRELLQQEIEKEKAARSELERTARVHSAALSDQMPTTKLTTAFENGNLSRKLSSASSLGSLEESHFLQASLDSSDSFSDRRNPGELSMSPYYMKSMTPSSFEAALRQKEGELASYMSRLASLESIRDSLAEELVKMTEQCEKLRGEAAVLPGLKSELEALRRRHSAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQIMSSSMGNP*	994

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g1991	993	Coils	Coil	570	643	-	-
	Dod10g1991	993	Pfam	TATA element modulatory factor 1 TATA binding	872	978	IPR022091	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	101	123	-	-
	Dod10g1991	993	PANTHER	GOLGIN CANDIDATE 5	1	991	-	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	160	174	-	-
	Dod10g1991	993	Coils	Coil	673	802	-	-
	Dod10g1991	993	Coils	Coil	885	926	-	-
	Dod10g1991	993	Coils	Coil	370	455	-	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	135	149	-	-
	Dod10g1991	993	Coils	Coil	951	978	-	-
	Dod10g1991	993	Coils	Coil	487	542	-	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	210	235	-	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	76	318	-	-
	Dod10g1991	993	Coils	Coil	238	271	-	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	41	62	-	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	292	318	-	-
	Dod10g1991	993	Pfam	TATA element modulatory factor 1 DNA binding	461	532	IPR022092	-
	Dod10g1991	993	MobiDBLite	consensus disorder prediction	245	264	-	-
	Dod10g1991	993	Coils	Coil	133	153	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g1991	Dod-Chr10	41707212	41715523	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g1991	664	800	Structural Maintenance of Chromosomes family	AT5G61460	29.114	7.74e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g1991	K20286		-	gmx:100807759	1442.56