Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1972 ATGACAGCCGCAGGAACAACCTGCTCTGAAGCTTCTACCACCACCAGCAACTCCTCCACAGCTACTACTTCAAACTCCAACAAGAAGAACACAACGAAACCAAAGAAAACCGGGGCACAAAAACAGAGCAAGCTCAAGAAACCCAGGGACTGCAGCAAGCAGCCGGTTTACCACGGGGTACGGATGCGTAATTGGGGAAAATGGGTGTCCGAAATTCGCGAGCCCCGCAAGAAATCACGCATCTGGCTCGGTACTTTCGCTACCCCTGAAATGGCGGCACGAGCACACGACGTTGCGGCTTTAAGCATTAAGGGCCAAGCAGCGATTCTCAACTTCCCAAAGATATCTAAATTGCTCCCCAGACCCCTCACGCTGACCCCACGTGACATCCAAGCCGCCGCTGCAGAAGCTGCTGCCATGGTGGAATTCGACAACGACCCTGCTTTGTTGTCAACTTCCTCTGTTTCCTCTGCTTCGGAGGAAGAAGAAGAAGGATCAGAGTCCTCTGAGCTGAGCGAGATTGTTGAGCTGCCAAACATAGAAGAGAGCTTCGACACGGTGGACTCGGGAACTGAGTTCATGCTGGTTGACTCGGTGGATAGTTGGGTGTACCCGCCAATGGGCTCGAGCATTTCTGAGATGATGATGTTTGGAGAAGAAGATAGTTTTGTTATGGAGAGCTCTGTTTGGGGTTGA 696 0.5187 MTAAGTTCSEASTTTSNSSTATTSNSNKKNTTKPKKTGAQKQSKLKKPRDCSKQPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQAAILNFPKISKLLPRPLTLTPRDIQAAAAEAAAMVEFDNDPALLSTSSVSSASEEEEEGSESSELSEIVELPNIEESFDTVDSGTEFMLVDSVDSWVYPPMGSSISEMMMFGEEDSFVMESSVWG* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1972 231 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Dod10g1972 231 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Dod10g1972 231 MobiDBLite consensus disorder prediction 1 57 - -
Dod10g1972 231 MobiDBLite consensus disorder prediction 152 173 - -
Dod10g1972 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 222 - -
Dod10g1972 231 CDD AP2 57 113 IPR001471 GO:0003700|GO:0006355
Dod10g1972 231 MobiDBLite consensus disorder prediction 1 38 - -
Dod10g1972 231 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Dod10g1972 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 222 - -
Dod10g1972 231 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Dod10g1972 231 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Dod10g1972 231 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Dod10g1972 231 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1972 Dod-Chr10 41546591 41547748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1972 35 206 AP2-EREBP Transcription Factor Family AT5G11590 58.470 1.14e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod10g1972 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1972 K09286 - gmx:100784419 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1972 10 41546591 41547748 Dod10g1972 10 41546591 41547748 ECH