Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1966 ATGGAATTGCCGGAACACTTCGTCGCTGGCTATTATGTCACCGGAGCCGACCAACGGTCACCGGAAAAGCGGCACGACGACCAGATGCCCGGCGAGTTTTTCGCCATCGACGATCTCCTCGACTTCTCTAACGCCGACGCCGTCATGCCCGACGGATTTTTGGACAATGCCACCGGAAACTCCACCTACACCGCCGCCGTTGACAGCTGCAACTCCTCCACTTCCGGCAGCGACAATCATTTCCCAAGCAACACCGTCGTCGATCCTCATTTCTCTGGACAACTTTGCGTTCCGTATGAGGACATGGCGGAACTGGAATGGCTCTCGAATTTCGTGGAAGAGTCGGTCCCGGCGGCGGAGGACGAGCTGAAAATGCTGCACATTATCTCCGGCGTGAAGCCGCCGCATACACCTGAGTGCTCCTCTTCCTCCGACTCGCGAAACGCACCGTTTTTCCACAGCGAGACCCCTCTCCCAGGCAAGGCACGAAGCAAGCGCTCACGCGCTGCGCCGGGAAATTGGTCCACGCGCTTGGTTAGCCTCGTTAAACCGGATGTTAAACCGAAACCCGCGAAAAAGAGGGATGGGCCCAACTCAGACCATTCGGGCCGGAAATGCCTGCACTGCGCTGCCGAGCGCACGCCACAGTGGCGGACTGGGCCCATGGGCCCAAAGACGCTGTGCAACGCGTGTGGGGTCAGGTACAAGTCCGGCAGGTTGGTGCCGGAGTACAGGCCCGCGGCGAGCCCAACATTTGTGTTGACTAAGCATTCTAACTCCCATAGGAAGGTGTTGGAGCTGAGGAGGCAGAAGGAGCTGCAGCAACGGCATCACCAGCATCACCATTTGATTAGTCAGAGTTCCATTTTTGGCGTATCCAACGGTAGAGATGCGTACTTAATCCACAACCGCAACGGTCCTGATTTTAGGCACATCATTTAG 942 0.5722 MELPEHFVAGYYVTGADQRSPEKRHDDQMPGEFFAIDDLLDFSNADAVMPDGFLDNATGNSTYTAAVDSCNSSTSGSDNHFPSNTVVDPHFSGQLCVPYEDMAELEWLSNFVEESVPAAEDELKMLHIISGVKPPHTPECSSSSDSRNAPFFHSETPLPGKARSKRSRAAPGNWSTRLVSLVKPDVKPKPAKKRDGPNSDHSGRKCLHCAAERTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELQQRHHQHHHLISQSSIFGVSNGRDAYLIHNRNGPDFRHII* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1966 313 MobiDBLite consensus disorder prediction 134 203 - -
Dod10g1966 313 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Dod10g1966 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 264 - -
Dod10g1966 313 PANTHER GATA TRANSCRIPTION FACTOR 9 2 313 - -
Dod10g1966 313 ProSitePatterns GATA-type zinc finger domain. 206 231 IPR000679 GO:0006355|GO:0043565
Dod10g1966 313 Pfam GATA zinc finger 206 239 IPR000679 GO:0006355|GO:0043565
Dod10g1966 313 MobiDBLite consensus disorder prediction 136 151 - -
Dod10g1966 313 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355|GO:0043565
Dod10g1966 313 PIRSF Txn_fac_GATA_plant 17 295 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dod10g1966 313 Gene3D - 199 250 IPR013088 GO:0006355|GO:0008270
Dod10g1966 313 PANTHER GATA TRANSCRIPTION FACTOR 2 313 - -
Dod10g1966 313 SMART GATA_3 200 250 IPR000679 GO:0006355|GO:0043565
Dod10g1966 313 MobiDBLite consensus disorder prediction 186 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1966 Dod-Chr10 41495915 41497243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1966 34 313 C2C2-Gata Transcription Factor Family AT4G32890 48.387 1.25e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod10g1966 GATA 9.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1966 - - gmx:100776605 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1966 10 41495915 41497243 Dod10g1966 10 41495915 41497243 ECH