Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1958 ATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGCCACAACTCCCGCACGTGCCCCAGCCGCGGCGGCGGAGGAGGGGCTGCGGGAGGTGGTGGAGGAGGAGGAGGAGTAGGAGGAGTGAAGCTGTTCGGTGTGAGGCTGACGGATGGATCGATCATAAAGAAGAGCGCCAGCATGGGGAACCTGACGGCGCTCCACCACCATTGTTCTTCTTCTCCGTCGTCATCCGCCGTCGCCGCCGCCAACAATCCCGGCTCCCCGTGCTCAGACCAGCCGCACGAGCCTGACGGTTACCTTTCCGACGACCCCGCACACGCCTCCACCTTCGCCAACCGCCGTGGCGAAAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACATCGGATGTTCTTGGTTGGTCTACAGAAGCTGGGCAAAGGAGACTGGCGTGGAATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTACTTCATCCGGCAGACTAATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGCCTTCAGATACACCTTCAGTGCCAGAAGAACAAGTACTACTTCCGCCTTCTGAGAACTCACAACCTGGTAATGCAAAATCACAACCTTCATTAAATCTATCCCTCAAGTCTGAATTTGAACCCATGGAAACTGCTTCCGAAGAAAATTTGGAAGAGGCCAATGAAACTACGATGGGATCTAATGGAGTGACACCAATGGCTCCTGGATTCTTCCCTGCTTATGTACCTCTCCAATTTTCCATATGGCCATCAATTGCTGCTCCCTTTGAAGAAGTTAATGGAGGAGAGACATCACATCATCAGGTCCTCAAGCCAATTCCGGTCATTCCCAAGGAACCTGTGAATGTTGATGAACTTGTCGGAATGTCTCATCTGAGCATAGGGGAAACACAGGTACCTCCTGATAGGGAGCCTTCCCCACTTTCCTTGAAATTGCTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCAGATCTAAACAGTGGCAAGAACAACGCAATTCAAGCGGTTTGA 1098 0.5191 MTRRCSHCSNNGHNSRTCPSRGGGGGAAGGGGGGGGVGGVKLFGVRLTDGSIIKKSASMGNLTALHHHCSSSPSSSAVAAANNPGSPCSDQPHEPDGYLSDDPAHASTFANRRGERKKGVPWTEEEHRMFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQTNATRRKRRSSLFDMVPDMPSDTPSVPEEQVLLPPSENSQPGNAKSQPSLNLSLKSEFEPMETASEENLEEANETTMGSNGVTPMAPGFFPAYVPLQFSIWPSIAAPFEEVNGGETSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQVPPDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSGKNNAIQAV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1958 365 MobiDBLite consensus disorder prediction 68 89 - -
Dod10g1958 365 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Dod10g1958 365 MobiDBLite consensus disorder prediction 1 30 - -
Dod10g1958 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 170 IPR017930 -
Dod10g1958 365 MobiDBLite consensus disorder prediction 176 219 - -
Dod10g1958 365 ProSiteProfiles SANT domain profile. 122 170 IPR017884 -
Dod10g1958 365 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 117 169 IPR006447 GO:0003677
Dod10g1958 365 SMART sant 118 168 IPR001005 -
Dod10g1958 365 MobiDBLite consensus disorder prediction 201 219 - -
Dod10g1958 365 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Dod10g1958 365 MobiDBLite consensus disorder prediction 1 18 - -
Dod10g1958 365 PANTHER TRANSCRIPTION FACTOR KUA1 1 359 - -
Dod10g1958 365 MobiDBLite consensus disorder prediction 68 105 - -
Dod10g1958 365 MobiDBLite consensus disorder prediction 342 365 - -
Dod10g1958 365 PANTHER OS01G0187900 PROTEIN 1 359 - -
Dod10g1958 365 CDD SANT 121 166 IPR001005 -
Dod10g1958 365 Gene3D - 120 171 - -
Dod10g1958 365 SUPERFAMILY Homeodomain-like 116 171 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1958 Dod-Chr10 41392545 41396629 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod10g1958 Myb_DNA-binding 5.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1958 - - gmx:778036 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1958 10 41392545 41396629 Dod10g1958 10 41392545 41396629 ECH