Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1950 ATGGGTGGGGAATTATCTCCTCAGCTGCTGGACTTGATCCCAAATGAGAGAGAGTGGCATCATCAGCACATGAACAGCAGCAGCAGAAGCGAAGGAGGAGGAGGGAAGAAATCCTCAGAGGAGAGAAAGCTGGAGCTGAGTCTTGCTCCACCCGGTGGTGAAGAAGACTGGTCTCTTAACCACAAAACAAAAACGGAGAGAGATCACTCTCTACTCTCTCTTGCTTATAACTTCCCTCATGCAAACAACAACAACAATGGCTTCCAAAGTCACAACATGTCTTCTGCATGGGCTTCCACCACCACAGGCCACCACCAACAAAATCAACAGCAGGGTAACAATAACAAAGCTTCATCATCATTTCTTCAGTTCCCATCATCATCATCACCACCACCATCAAGCCAGCCACAAAGCAGCAGCATGCCTGTGATGGGAAAGGATGCGTCACAGGCCTGCTGCCCCAAAGTAGCAGAGCTGCAGAGTGCAGAGAAGAAAGTGTTCTCTTCTCCCTCTTCTGCAAACACAGCTGTTCCCAACACCAACACCTCTCAGAAAAGAACTGCACCAGGTCCAGTAGTGGGATGGCCTCCAATTCGATCGTTCAGGAAGAACCTTGCAAGCAGCAGTTCTTCTAAGCCAGCTCCTCCAGAGTCACCCCAGCATCAACAGCCAAACAAGTTATTATCTGGTAAGAAACCTGTTGACAGCAACTATGGCAAAGGCATGTTTGTCAAGATCAACATGGATGGAGTGGCAATTGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAATCTCTCCACTGCTGTGGACGAGCTCTTCAGAGGCCTCCTTGCAGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAGCAAGCAAGGGGAAGAGAAACCAATTACAGGTTTATTGGATGGAAGTGGGGAGTATACTCTTGTTTATGAGGATAATGAAGGGGACAGGATGCTCGTTGGGGATGTGCCATGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTACTGAGTTACCCTTGGTGGTAAGCAAGACAAAGACACCACTTGACTCGGCAATGAAATGA 1095 0.4849 MGGELSPQLLDLIPNEREWHHQHMNSSSRSEGGGGKKSSEERKLELSLAPPGGEEDWSLNHKTKTERDHSLLSLAYNFPHANNNNNGFQSHNMSSAWASTTTGHHQQNQQQGNNNKASSSFLQFPSSSSPPPSSQPQSSSMPVMGKDASQACCPKVAELQSAEKKVFSSPSSANTAVPNTNTSQKRTAPGPVVGWPPIRSFRKNLASSSSSKPAPPESPQHQQPNKLLSGKKPVDSNYGKGMFVKINMDGVAIGRKVDLNAYDSYENLSTAVDELFRGLLAAQRDSSAGGVHSKQGEEKPITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELPLVVSKTKTPLDSAMK* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1950 364 MobiDBLite consensus disorder prediction 83 128 - -
Dod10g1950 364 MobiDBLite consensus disorder prediction 34 49 - -
Dod10g1950 364 Pfam AUX/IAA family 44 348 IPR033389 -
Dod10g1950 364 MobiDBLite consensus disorder prediction 164 234 - -
Dod10g1950 364 Gene3D - 236 356 - -
Dod10g1950 364 ProSiteProfiles PB1 domain profile. 241 345 IPR000270 GO:0005515
Dod10g1950 364 MobiDBLite consensus disorder prediction 164 188 - -
Dod10g1950 364 MobiDBLite consensus disorder prediction 202 230 - -
Dod10g1950 364 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 7 355 - -
Dod10g1950 364 MobiDBLite consensus disorder prediction 83 151 - -
Dod10g1950 364 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 355 IPR003311 GO:0005634|GO:0006355
Dod10g1950 364 SUPERFAMILY CAD & PB1 domains 232 342 - -
Dod10g1950 364 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1950 Dod-Chr10 41317947 41321320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1950 244 355 B3 DNA Binding Superfamily AT2G46530 32.143 1.71e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod10g1950 AUX_IAA 5.3e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1950 K14484 - gmx:100799244 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2639 06 56205878 56213472 Dod10g1950 10 41317947 41321320 ECH
Dod10g1950 10 41317947 41321320 Dod10g1950 10 41317947 41321320 ECH
Dod10g1950 10 41317947 41321320 Dod06g2639 06 56205878 56213472 PCT