Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1943 ATGGATAGCCTGAGTTGGGATGCCTCACAACTTGTTCATAACGTACCAATCTTGTGGAGCACTACTCAGCAACAAGATCACCTTGAAGGAGACTACTTCATGGCCAATAATATAAGTTCAACCTTTCTTAATCACATGCAAGAGATGCAGAAGGCTCAAACATGCCATCTGTATCCCAATTCTGAAAAAGTAAGCGACATGGTTCAGTCAGCTTCTGAGATTGTGAGTATGATGCCAAACAACAATTTTTCACAGAGAGCAGGAAACACGCCGCTGAAATCGGGAGCTGGAACCAGCTGGGAAGAAGCTTTAACAACTCAATCATGCCCGTCCCTTTCAGTCAATTTGAGCACATTTACTAGCAATTATGTGCCAGATTTCAACATGGCCCACCACCACCAACAACAACAACTTCTTATCAACAGCACCACACAGAATGGCAAGGCTACCGCCTGCTCCCTTGAGTCACTTGATTGCTTGCTTTCCGCTACTAACAGCAACACGGACACATCTCTCGAAGATGATGGGATTTCCATGATTCTTTCTGAGTGCAGAAACTTGTGGAACTTCAGCTATGGCAGTGCTGTTTCTTCTGGTGAATCTGTGAGCAATGCTTCCAATGCTAGAAACAAGGACATGCAGTACGCAGCCAGTGAACTCGATGAAACAGTAGTGTCTCAAGGTTCCTCGGATAAATATGTCAGCCAAGGGAAAATCATAGATTCTAAGGCTAACTGCACAAAAAGGGTGAGCAATGATCAATATGAGCTCATCAAAGTTGCTGCTGCCAGTGATCATGATCCCTACTTCAGTGTTTTTCAGAATTCTTCTGCTAATGAAGGAGGCTTCAAGCTTATCTCAGAGAATCCTCCAAAATCCAAGAAACCCAGATGGGATAAGCGTCCTGCAGGTTCATCTAATATCAACTTCCAGCAGCCAAATTCATCTGTATCACATTCCATTGAAGAGCCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATACAGGGCTGCAGCTTTTAGGCCTGTGAACTTGGGCTTGGAGGTTGCGGAAAAGCCCAAAAGGAAGAATGTTAGGATATCAACTGATCCTCAAACTGTGGCTGCAAGGCAGAGAAGGGAGAGAATAAGTGAGAAGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCGAACTACCTCAAGTTCCTCAGGTCACAAGTCAAAGCACTAGAGTGTCTAGGGAACAAGCTTGACACAATGAATTGTCCTCCTACTAGCATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGGCAACCCAACATTTCCCCGCCCAAAACCCTAGCCACAGCCAACATTCCCAGGGTTGA 1392 0.4504 MDSLSWDASQLVHNVPILWSTTQQQDHLEGDYFMANNISSTFLNHMQEMQKAQTCHLYPNSEKVSDMVQSASEIVSMMPNNNFSQRAGNTPLKSGAGTSWEEALTTQSCPSLSVNLSTFTSNYVPDFNMAHHHQQQQLLINSTTQNGKATACSLESLDCLLSATNSNTDTSLEDDGISMILSECRNLWNFSYGSAVSSGESVSNASNARNKDMQYAASELDETVVSQGSSDKYVSQGKIIDSKANCTKRVSNDQYELIKVAAASDHDPYFSVFQNSSANEGGFKLISENPPKSKKPRWDKRPAGSSNINFQQPNSSVSHSIEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVAEKPKRKNVRISTDPQTVAARQRRERISEKIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALECLGNKLDTMNCPPTSIAFSFNPSFPMATQHFPAQNPSHSQHSQG* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1943 463 Pfam Helix-loop-helix DNA-binding domain 372 411 IPR011598 GO:0046983
Dod10g1943 463 CDD bHLH_AtIND_like 363 419 - -
Dod10g1943 463 PANTHER TRANSCRIPTION FACTOR BHLH87 10 459 - -
Dod10g1943 463 MobiDBLite consensus disorder prediction 304 321 - -
Dod10g1943 463 Gene3D - 367 421 IPR036638 GO:0046983
Dod10g1943 463 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 459 IPR045843 GO:0003700|GO:0006355
Dod10g1943 463 MobiDBLite consensus disorder prediction 281 321 - -
Dod10g1943 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
Dod10g1943 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 426 IPR036638 GO:0046983
Dod10g1943 463 SMART finulus 368 417 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1943 Dod-Chr10 41195796 41197425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1943 119 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.284 5.37e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g1943 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1943 - - gmx:100793830 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1943 10 41195796 41197425 Dod10g1943 10 41195796 41197425 ECH
Dod10g1943 10 41195796 41197425 Dod06g2684 06 57576046 57577405 PCT