Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1923 ATGGACTCCGAAGCAGACCCTCCTCAGAACCCAGCTAAAAGACACAAATGCTCAGCATGCTATAAGCAATATAAGAAAAAGGAGCATCTTATTGAGCACATGAAAATCTCATACCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGACTTTGTTCAACAATATTCTCTCAACAAGGTTGTCAACTTTGCTTGGTACTCTTTGATAGTGCCTTGTCTCTCAGTGAGCATAGAGAAACATGTTGCCTATCTTCCCCTCTTCCTTTGGGAACAAGTGCTTCGCCCTATCTAAGCTCCTGCATTGACTGTCAAGGTCCTCCTGACGAAAACCATGCTGGTGGACGCCCTGGAGCAATTGCAATGGATTGTGAAATGGTTGGTGGTGGGAGTGATGGATCACTGGAACTTTGTGCTAGAGTATGCTTGGTTGATGAAGATGAGCACTTAATCTTCCATGCCTATGTACAGCCGCTAATCCCTGTTACTAATTATAGATATGATATAACTGGGTTGACAGAAGAGCATCTTAGAAATGCCATGCCACTGAAAGAAGTTCAGGAAAAGGTATTGCAAATTCTATACAATGGGGAATCAATTGGCAAAGTTAGATTGGATGGTGGAAAGGCCAGGCTTTTGGTGGGGCATGACTTAGCTCATGATCTTGATTGCTTGAAATTAAATTATCCCGACCACATGCTGAGGGACACTGCGAAATATCGTCCATTGATGAAAACAAACTTGGTCAGCCATTCGCTGAAGTATCTTACCAAAACATATCTAGGTTATGATATCCAATGCAGCACTCATGACCCATATGAAGATTGTATTTCTGTCATGAGATTGTATAAGAGGATACGGGGACAAATTCATAAGGAGGAAGGCTATGGAACATTGACTCCTATTAAAAACATCTTGGGCAAGTCTACTGATTGCTGGGGATCCAGGGAAGTTAGCAACCTCACACCAGATGAGCTTTATGCCATGTCAAGATCAGACTACAGGTGTTGGTGTCTGGATTTGAGACCAAACTTGGAAGCCTGA 1101 0.4305 MDSEADPPQNPAKRHKCSACYKQYKKKEHLIEHMKISYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGLCSTIFSQQGCQLCLVLFDSALSLSEHRETCCLSSPLPLGTSASPYLSSCIDCQGPPDENHAGGRPGAIAMDCEMVGGGSDGSLELCARVCLVDEDEHLIFHAYVQPLIPVTNYRYDITGLTEEHLRNAMPLKEVQEKVLQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLKLNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTKTYLGYDIQCSTHDPYEDCISVMRLYKRIRGQIHKEEGYGTLTPIKNILGKSTDCWGSREVSNLTPDELYAMSRSDYRCWCLDLRPNLEA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1923 366 SMART exoiiiendus 137 311 IPR013520 -
Dod10g1923 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Dod10g1923 366 Gene3D - 135 315 IPR036397 GO:0003676
Dod10g1923 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Dod10g1923 366 Gene3D Classic Zinc Finger 2 65 - -
Dod10g1923 366 Pfam Exonuclease 139 302 IPR013520 -
Dod10g1923 366 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Dod10g1923 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 362 - -
Dod10g1923 366 PANTHER EXONUCLEASE FAMILY PROTEIN 12 362 - -
Dod10g1923 366 SUPERFAMILY Ribonuclease H-like 139 309 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1923 Dod-Chr10 40877105 40881337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1923 1 363 C2H2 Transcription Factor Family AT2G48100 54.496 5.39e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1923 K18327 - gmx:100805841 631.328