LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g1917	ATGAGCCGCTACGACAGCCGCTCCGCCGACCCCACTTCCTACCGTGACCGAAGAAGTGATTCGGGGCTAGGTGGTGCTCCTATTCCGGCCACAGCTACAGCTGCTACAGGAGGCTACGGTGGTTCTAGCAGAAGGGATTACGACGATGGCGCCCCCGCCGACCCCAGGAACCTCAATTTGGACGGCTTGCCACATTTCGAGAAGAATTTCTACCACGAATCGCCGTCGGTTAGGGCGATGACGGACTCCGAGGTTAGCGAATACCGCCACCGGAGGGAAATCACCGTCGAAGGCCGCGATGTTCCCAAACCTGTCAAATCCTTCCACGATGTCGGTTTTCCAGAATATGTATTGCAAGAGATTAAGAAAGCTGGATTTGTTGAACCTACGCCAATTCAGTCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGACCTTATCGGAATTGCGGAAACTGGGTCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATAGTGCATGTTAACGCCCAGCCGATTCTAGATCCTGGAGATGGACCAATTGTGTTGGTTTTGGCTCCAACACGTGAACTTGCCGTTCAAATACAGCAGGAGGCTACTAAATTTGGTGCGTCATCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCAAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAGATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTTGTGTTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATACGAAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCTACTTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTGATTATAGGTTCTTCAGATTTAAAAGCTAATCATGCTATACGGCAGTATGTTGACATTGTTTCTGAAAAGCAGAAATACGATAAATTGGTAAAGTTGCTGGAGGACATCATGGATGGCAGCCGCATACTTATTTTCATGGATACCAAGAAAGGATGTGATCAGATCACGAGGCAACTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTTTCTGAATTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTTGAAGATTATGTACATCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCGAATGCCAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCAGCAATGGGGCGTGGTGCACCTCCTCCGCCATCAGGTTTCCGAGACCGTGGGAAGGGTTATGGCAGTGGTCGCACGTGGAGCTGA	1530	0.4824	MSRYDSRSADPTSYRDRRSDSGLGGAPIPATATAATGGYGGSSRRDYDDGAPADPRNLNLDGLPHFEKNFYHESPSVRAMTDSEVSEYRHRREITVEGRDVPKPVKSFHDVGFPEYVLQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGFRDRGKGYGSGRTWS*	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g1917	509	Pfam	DEAD/DEAH box helicase	130	301	IPR011545	GO:0003676\|GO:0005524
	Dod10g1917	509	CDD	DEADc_DDX5_DDX17	117	312	-	-
	Dod10g1917	509	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	462	IPR027417	-
	Dod10g1917	509	SMART	ultradead3	125	328	IPR014001	-
	Dod10g1917	509	PANTHER	LD32873P	62	496	-	-
	Dod10g1917	509	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	62	496	-	-
	Dod10g1917	509	SMART	helicmild6	365	446	IPR001650	-
	Dod10g1917	509	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	258	266	IPR000629	-
	Dod10g1917	509	Pfam	Helicase conserved C-terminal domain	337	446	IPR001650	-
	Dod10g1917	509	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	106	134	IPR014014	GO:0003724
	Dod10g1917	509	MobiDBLite	consensus disorder prediction	482	509	-	-
	Dod10g1917	509	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	340	485	IPR001650	-
	Dod10g1917	509	CDD	SF2_C_DEAD	325	455	-	-
	Dod10g1917	509	MobiDBLite	consensus disorder prediction	1	59	-	-
	Dod10g1917	509	Gene3D	-	69	316	IPR027417	-
	Dod10g1917	509	MobiDBLite	consensus disorder prediction	1	17	-	-
	Dod10g1917	509	Gene3D	-	318	483	IPR027417	-
	Dod10g1917	509	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	137	312	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g1917	Dod-Chr10	40824825	40829390	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g1917	93	466	Eukaryotic Initiation Factors Gene Family	AT3G19760	34.667	3.20e-78	249

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g1917	K12823		-	gmx:100790464	909.827