Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1902 ATGATGAAAGGTTTGATGTTCCAATACCAACAACAACAGCAGCAGGAACCATTAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCCGGTGAAGCAAGTGCTTCCTCAGGAACCAAAACCGAAATCGGTACCAATTACCCGCAACAATACTTGGCTCCACCAGCAACTCAATCTGAAACTCAGCCTCCAACTAAGAAAAAGAGAAACCTTCCTGGTAACCCAGACCCAGATGCTGAAGTTATAGCCTTGTCGCCAAAGACTCTCCTGGCAACAAATAGGTTCATCTGTGAGATCTGCAACAAAGGTTTCCAAAGGGATCAGAACCTTCAGCTTCATAGGAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGAACAAACAAAGAGGTGATAAGGAAGAAGGTGTACGTGTGCCCGGAACCCACATGTGTGCACCATGACCCATCAAGGGCCCTGGGGGACCTAACAGGTATCAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCACTGGCAGAGGAGAGTGCAAGAGCAGTGACAGGAGCAGGAGCAGGAGGAGCCTCTTCTTCAGCCTCTCATCAACAAATAGGTCTCCAAACTCATCATCATCTCCATGGCTTCCCATTAAAACAAGAGCAACAACAAGGTGGTAGTAGTTTCAACTTAAGGCCAGATATGCCCCCATGGCTTGGCCCACATAGCAGCACTGTTGTTGATCTCTCATCCTCATCAGCCTCATCAATGTTCTCATCAACACCAAGGTTATTTGGCCAACAAGACCACCACCACCACCCAAGCCTACATGAGAGCCAAAACCCTAACCCTAGCCTTGGTCCCACTCTCCCACCGTACCAGCCAGAGGCTTCACCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCGCAGATGGGTGCAACCATCACAAAAACAGGCTCATCATCCTCATCACAACAGTCACGGCCCATCATGTTGAGGACCCACCAGCAAGGTCACGTGTCTTCTGCTGCTGCTGCTGCTGATAACTCTTCTGCTGGCAATGCCACCAACAACAACAACGCTATTATCTCATCATCGAGTGGTGGTGGTGGTTTTGGTTTGAATTTGTCGTCACGTGAAGACACTACAGGTTTTGGCCATGGCTTCGTGGCAGTGCCACATTTCGGGAATAAAGCTGCTGCTTCTGCTGTTCCTCCTCCTCCTCCTCCTCCTACTTCTGGTGTTTCTTCTCCATCCCTCCTTCAGCATGTCATGAACTCGTTCTCTTCTGCTTCCGGGTTTGATGGAGCTTCTTTTGAGGACGCTTTTGGCGGGATCCTTACCTCCAACAGAGGAGAAATTGTTGCGAAAACTACCGATGGCGGTGGCGCCGCCGGAGGAAACGACGAAGCCTTGACGAGGGATTTCTTGGGGCTTAGACCCCTCTCTCATAGCGATATCCTCACCATTGCTGGCATGGGAAACTGCATGAACTCCTCCTCCTCCTCCTCCCATGATCGACAAAACCATCCCCAAAAACCGTGGCAAGTCTCAATTAGAAGAAGGGAATATTAA 1713 0.4945 MMKGLMFQYQQQQQQEPLVVEENMSNLTSASGEASASSGTKTEIGTNYPQQYLAPPATQSETQPPTKKKRNLPGNPDPDAEVIALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAVTGAGAGGASSSASHQQIGLQTHHHLHGFPLKQEQQQGGSSFNLRPDMPPWLGPHSSTVVDLSSSSASSMFSSTPRLFGQQDHHHHPSLHESQNPNPSLGPTLPPYQPEASPHMSATALLQKAAQMGATITKTGSSSSSQQSRPIMLRTHQQGHVSSAAAAADNSSAGNATNNNNAIISSSSGGGGFGLNLSSREDTTGFGHGFVAVPHFGNKAAASAVPPPPPPPTSGVSSPSLLQHVMNSFSSASGFDGASFEDAFGGILTSNRGEIVAKTTDGGGAAGGNDEALTRDFLGLRPLSHSDILTIAGMGNCMNSSSSSSHDRQNHPQKPWQVSIRRREY* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1902 570 MobiDBLite consensus disorder prediction 544 561 - -
Dod10g1902 570 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Dod10g1902 570 MobiDBLite consensus disorder prediction 1 69 - -
Dod10g1902 570 MobiDBLite consensus disorder prediction 1 80 - -
Dod10g1902 570 SUPERFAMILY beta-beta-alpha zinc fingers 95 193 IPR036236 -
Dod10g1902 570 MobiDBLite consensus disorder prediction 264 345 - -
Dod10g1902 570 Pfam Zinc-finger double-stranded RNA-binding 96 118 IPR022755 -
Dod10g1902 570 Gene3D Classic Zinc Finger 151 231 - -
Dod10g1902 570 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Dod10g1902 570 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 26 541 - -
Dod10g1902 570 MobiDBLite consensus disorder prediction 544 570 - -
Dod10g1902 570 Gene3D Classic Zinc Finger 76 143 - -
Dod10g1902 570 MobiDBLite consensus disorder prediction 357 376 - -
Dod10g1902 570 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 541 - -
Dod10g1902 570 MobiDBLite consensus disorder prediction 288 309 - -
Dod10g1902 570 SMART c2h2final6 138 168 IPR013087 -
Dod10g1902 570 SMART c2h2final6 173 193 IPR013087 -
Dod10g1902 570 SMART c2h2final6 96 118 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1902 Dod-Chr10 40578905 40586584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1902 20 364 IDZ Gene Family AT1G55110 59.341 1.56e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1902 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1902 K25870 - qsu:111995117 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1902 10 40578905 40586584 Dod06g2730 06 58382850 58387789 PCT