Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1895 ATGGATCATTATTACTCCCAATTTGAATCCGACCCTCCTGCTACCTACAATGGCGATACCAACCAAGTGGAATTTAATCGAGGGCATGGGGTTCATGCCAATGCCATTGCCAATGATGACGATGACCTAGATTACGCAAAACCCTCTTCCAATCGCCGCGATTCGTCTTCAGGAAAACTCTTCGTTGGAGGCATCTCTTGGGAGACTTCTGAAGAGTCATTTTTTAAATACTTCAACAAATTTGGGGAGGTGGTAGATTCAGTGATAATGATGAATAAATACTCTGGAAGGCCTCGGGGTTTTGGCTTTGTAACATTTGCTGATTCAGCTGTGGCAGACGAAGTTTTGGCAAAGGAGCATACCATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTCCCTAGGGAGGACATGGAAGCTATTGGAGTATTCAAAACAAAGAAGATCTTTGTCGGTGGATTACCCCAGATTCTCACTGATGATGAGTTGAAGGAATACTTTTCAACTTATGGTAATATTGTTGAGTACCAAATCATGCTAGATCATAACACTGGACGATCCAGGGGCTTCGGATTTGTCACTTTTGACAGTGAAGATTCAGTTGAAAAGGTTTTTTCAGCAGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCTAAAAGATCTGGAGTTGATTATAGTAGCTCTTCGCGAAAGTCGTATGGTGGTTTTGGCAATGGAATGGATGGATTTGGTGGGCATAGTTCTAGAGGTCGTAATCATGGGAAAAGAGGTGTACCATATGCAGATCCTGGCATGAATGGACCATATCCATATGGCCATTTTGAGGGGAGCTATGGTGGAAACCCTGCCGCAGCTTATGGTGGCTATTGTGGATATGGTTATGGATTTGGATACGGTGGGCCAATGTATAGCTTTGGTGGTTTTAGAGTCAATTCTTATGGCAATACTCCTGGTTTTGGTGGCATTGCTGTCTATGGAGATGGTAATGCATATGGAAGAGCTGGCAGTTTCAATCGCACTGGTGGCTGTGACAATGATGGTCTTACTCCTGGAAGATATCATCCTTACTGGAAGTAA 1098 0.4353 MDHYYSQFESDPPATYNGDTNQVEFNRGHGVHANAIANDDDDLDYAKPSSNRRDSSSGKLFVGGISWETSEESFFKYFNKFGEVVDSVIMMNKYSGRPRGFGFVTFADSAVADEVLAKEHTIDGRVVEVKRTVPREDMEAIGVFKTKKIFVGGLPQILTDDELKEYFSTYGNIVEYQIMLDHNTGRSRGFGFVTFDSEDSVEKVFSAGKIHEIGGKQVEIKRAEPKRSGVDYSSSSRKSYGGFGNGMDGFGGHSSRGRNHGKRGVPYADPGMNGPYPYGHFEGSYGGNPAAAYGGYCGYGYGFGYGGPMYSFGGFRVNSYGNTPGFGGIAVYGDGNAYGRAGSFNRTGGCDNDGLTPGRYHPYWK* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1895 365 SUPERFAMILY RNA-binding domain, RBD 146 253 IPR035979 GO:0003676
Dod10g1895 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 134 IPR000504 GO:0003723
Dod10g1895 365 SUPERFAMILY RNA-binding domain, RBD 50 138 IPR035979 GO:0003676
Dod10g1895 365 PANTHER BOULE-RELATED 50 349 IPR037366 GO:0003729
Dod10g1895 365 MobiDBLite consensus disorder prediction 1 20 - -
Dod10g1895 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 50 349 - -
Dod10g1895 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Dod10g1895 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 217 IPR000504 GO:0003723
Dod10g1895 365 Gene3D - 56 139 IPR012677 -
Dod10g1895 365 SMART rrm1_1 59 130 IPR000504 GO:0003723
Dod10g1895 365 SMART rrm1_1 148 221 IPR000504 GO:0003723
Dod10g1895 365 Gene3D - 143 266 IPR012677 -
Dod10g1895 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1895 Dod-Chr10 40537896 40541134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1895 50 222 Eukaryotic Initiation Factors Gene Family AT1G71770 29.744 8.13e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1895 K12741 - gmx:100818080 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1895 10 40537896 40541134 Dod10g1895 10 40537896 40541134 ECH