Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1891 ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGTCTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACAACTTATGGACATGGTTGCTGGAGCTCTGTCCCAAAACTTGCTGGCCTGCAAAGGTGTGGGAAGAGTTGCAGATTAAGATGGATAAATTATCTACGACCTGATTTGAAACGTGGAAGCTTCTCTCCACAAGAAGCAGCCCTCATTATTGAACTCCATAGTATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCACCTTCCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCCTTTCTCATGATGTTGTTTCTTCTTTAGCCACATTTTCTGATCATATTCACGGCCCCGGCAACGGTAGTTCCGTGGAAAGTTTTTTCCCTTTAACTGAAAACCCTATCCTAAACTCCCATCATCACCACCTTGATCAGCTCTACCTTCCCATCCCATCCCCAATCCTACAAGGTAATTTTGATCATAATGATATAAAGGTTGTTGACATTAACAACTATAATGCCAATTTCCTTCATATTCAGAATCCAATGCCAGAAACAGCACCACCCATTAATCCATCTTTGTATGAATTAGATACATGGTCCTTTGGCTGTGTTCCTCTTCACAACCTTAGTCCTCCAAATCAAGAAAATCAAATTATTACCAAAAGTGATGATGCCACCCCAAATTACATTGTTGAGAAGCTCATCAATCCAAGTACATGGCAGCATTATGACTATCACTTGGTGGAACAACCCATTGTGCCAAAAATCTGTGAGAGCATTGAGGATTACGTTTGCAGCATCCCATATTCACCTGCTTCACAAGAGGCTCTTGCTAGAATTGAGTGTTACGCGCCCACTATTTGTCCACAAGATCAAAGTCTGGCTGTCAATCAATTGGAATACATTGACACCCTCATGCCATATTCGTTGCCATCCTCAACAACATCATCATCATCGGTATCATTCTACCAAGCAGAAAAATAG 1038 0.4162 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVSSLATFSDHIHGPGNGSSVESFFPLTENPILNSHHHHLDQLYLPIPSPILQGNFDHNDIKVVDINNYNANFLHIQNPMPETAPPINPSLYELDTWSFGCVPLHNLSPPNQENQIITKSDDATPNYIVEKLINPSTWQHYDYHLVEQPIVPKICESIEDYVCSIPYSPASQEALARIECYAPTICPQDQSLAVNQLEYIDTLMPYSLPSSTTSSSSVSFYQAEK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1891 345 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Dod10g1891 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod10g1891 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod10g1891 345 Gene3D - 11 67 - -
Dod10g1891 345 PANTHER TRANSCRIPTION FACTOR MYB26 2 337 - -
Dod10g1891 345 CDD SANT 17 61 IPR001005 -
Dod10g1891 345 SMART sant 66 114 IPR001005 -
Dod10g1891 345 SMART sant 13 63 IPR001005 -
Dod10g1891 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod10g1891 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod10g1891 345 PANTHER MYB DOMAIN PROTEIN 55 2 337 - -
Dod10g1891 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod10g1891 345 CDD SANT 69 109 IPR001005 -
Dod10g1891 345 Gene3D - 69 116 - -
Dod10g1891 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1891 Dod-Chr10 40494554 40496639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1891 1 190 MYB Transcription Factor Family AT3G13890 64.878 2.43e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1891 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1891 K09422 - gmx:102662609 529.25