Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1887 ATGGTTGTGTCTCCTTGCACACAATACCACTTTTGTATTTTACATATGGAGTTGGATCCTCAAGATATTATTTCAACATTACCTGATATATTCTACAGAAAATATCGACAAGAGCTAGGTACACAACTGACATTCATAGACCATCAAGGCAATGTTTTTGTTATTATATTGGAGAAGGGACTGCGAACTGGTTACATTGTTGGTGGTCTGAAGGAGTTAATGGAGTTTTACAATATTGAAGTTGGTGGTTGGCTGAAACTTTGGTATGCAGGAGGCAACATGTTTTACATCAAGGTGAAGGATGGAAACATGTCTCCAGTCACATACTCTCATTGTGCTACCGAAGTAGTTGGAGACGTCATGCTACCATTTTTGTCAAGTTCATTTGTGAGCCCTGATGAAGGAAGTCATCAGTTCATAGTTCATAATGGTCTTTCGTGTGATAATGTTGTCTTTCAATTTACCTCCCACCCTATTGAACAATCTGGAACTAATTTTGCTGATTTAATTGATAGTCATGCTTTTTTGTGTCATACAATCCCTAATAAGATGACTGAAAATTTGGATGGTTCTGAAGTTGGTCTTCAATTTGAATTAAACAATTTCATCCACCCTACGGATAAACCTATGCATGAAGTTGATCTTGGTGTGTACTACGGACATTTATCTCAGATGGATGATGTATTTTTTTGTGATGAGCCTTCGTTCATTGATTATCCTCCTCAGATTGATGAAGAAATGAATTCAATGGCTGCGGTTCTTGATTATGTTGGTATAGATGGGGAACCTCCAAATGAAGATCTTATGGATGTTGGTGGTGATTATCAGGCACAAGTGGATGCAGTTGATATTGGGGTTGTACAGCATGATGATAAACTTAATGGTGGTGGTGAGGCATTTATAGGTCACCAACCTATTACTGCTGTTGTCTATGAAAAACACATCACTGCCTACCAATCACAGAGTCATTCATTGGGCCTTCCTGCTACATTCGTGGCTCAAGCTTTTCCTAGCAGACCTACTTCTTTGGTGGTAAGAGATGATAATGGAATGACATATGATATGGAATTGCGTTGGGGTACAAAGAGATTGACAGAAGCATATTTGACTAAGGGTTGGAAGCAGTTTGCTGTGGACCACCATCTTACTGATGGAAGTGTGGTCATCTTTAGGGTGTTTGCTAATAAGGAGCAGGTTGTAATTGCTAATGTTCTGAATGATTGA 1224 0.3889 MVVSPCTQYHFCILHMELDPQDIISTLPDIFYRKYRQELGTQLTFIDHQGNVFVIILEKGLRTGYIVGGLKELMEFYNIEVGGWLKLWYAGGNMFYIKVKDGNMSPVTYSHCATEVVGDVMLPFLSSSFVSPDEGSHQFIVHNGLSCDNVVFQFTSHPIEQSGTNFADLIDSHAFLCHTIPNKMTENLDGSEVGLQFELNNFIHPTDKPMHEVDLGVYYGHLSQMDDVFFCDEPSFIDYPPQIDEEMNSMAAVLDYVGIDGEPPNEDLMDVGGDYQAQVDAVDIGVVQHDDKLNGGGEAFIGHQPITAVVYEKHITAYQSQSHSLGLPATFVAQAFPSRPTSLVVRDDNGMTYDMELRWGTKRLTEAYLTKGWKQFAVDHHLTDGSVVIFRVFANKEQVVIANVLND* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1887 407 Gene3D - 303 405 IPR015300 -
Dod10g1887 407 ProSiteProfiles B3 DNA-binding domain profile. 310 407 IPR003340 GO:0003677
Dod10g1887 407 SMART B3_2 311 406 IPR003340 GO:0003677
Dod10g1887 407 SUPERFAMILY DNA-binding pseudobarrel domain 10 101 IPR015300 -
Dod10g1887 407 Pfam B3 DNA binding domain 315 398 IPR003340 GO:0003677
Dod10g1887 407 SUPERFAMILY DNA-binding pseudobarrel domain 310 400 IPR015300 -
Dod10g1887 407 CDD B3_DNA 311 391 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1887 Dod-Chr10 40464169 40466349 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod10g1887 B3 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1887 - - ahf:112707102 124.79