Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1872 ATGGAGCCTCGCGTTGGCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGAGAGATCTATCTCGGTACTAATGTTCAGACGAATGAAGAGGTTGCAATTAAGCTCAGTGTCAAAACCAAGCATCCTCAATTGCTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCGTTGAGGGAGAATACAATGTCCTAGTGATGGACTTACTGGGCCCTAGTCTTGAAGATTTATTCAATTTCTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGGGTTGAATTTATTCATTCGAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTTTATGCCATTGATTTTGGACTTGCTAAGAAATACAGAGACAGCTCTACACATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGACTTAGAGTCACTTGGCTATGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCATGGCAGGGATTGAAAGCAGGTACAAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCTGAATTTGCTTCATATTTCCATTACTGTCGGTCACTGCGGTTTGATGATAAACCAGATTATGCTTATTTGAAAAGGCTTTTCCGTGATCTTTTCATACGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTGCACGTGCTGTTGGTCTTGCTCCTGGACCAAGTTCTGGTGTGCCACCAGCTGTTGTGAATACTGACAGACAGACAGGTGGGGAAGATGGTAGGCATGCTGGTTGGTCGTCGTCAGATCCTACTCGTAGAAGGAACTCTGGACCTATTGCAACCGATGGAACCTTATCCAGACAAAAGGCCCCTATTACAAGTGACTCAACTGGATCTAAAGATGCCATGTTACCTAGTTCTAATTTCTTCCGGTCAAGTGGATCTGCAAGGAGAGCTGCTGTCTCCACCAGTCGTAATGCAGGTGTTGCTGACAGTGACACTGAGCCCTCTCGTCCTCTCACCATGGATGCAAATCCAGGAGCACTTCGTAAAATTTCTGGTGCTCAGAGAAGTTCGCCTATCACATCATCCGAGCACAACCGAGCATCCTCTGGCAGAAACACATCAAACATAAGGAATTTTGAGTCAACTCTCAGAGGTATTGAGAGCCTGAATTTCAATGAGGAGAGGGTACAGTATTAG 1422 0.4346 MEPRVGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLSVKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPARAVGLAPGPSSGVPPAVVNTDRQTGGEDGRHAGWSSSDPTRRRNSGPIATDGTLSRQKAPITSDSTGSKDAMLPSSNFFRSSGSARRAAVSTSRNAGVADSDTEPSRPLTMDANPGALRKISGAQRSSPITSSEHNRASSGRNTSNIRNFESTLRGIESLNFNEERVQY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1872 473 CDD STKc_CK1_delta_epsilon 8 281 - -
Dod10g1872 473 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Dod10g1872 473 SUPERFAMILY Protein kinase-like (PK-like) 5 289 IPR011009 -
Dod10g1872 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dod10g1872 473 MobiDBLite consensus disorder prediction 342 404 - -
Dod10g1872 473 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g1872 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Dod10g1872 473 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod10g1872 473 PANTHER CASEIN KINASE-RELATED 1 455 - -
Dod10g1872 473 MobiDBLite consensus disorder prediction 305 450 - -
Dod10g1872 473 MobiDBLite consensus disorder prediction 428 450 - -
Dod10g1872 473 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 455 IPR030509 GO:0004672|GO:0005524
Dod10g1872 473 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1872 Dod-Chr10 40190158 40194645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1872 7 222 EF-hand Containing Proteins AT2G17890 27.556 3.68e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dod10g1872 Pkinase 3.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1872 K02218 - gmx:100778165 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1872 10 40190158 40194645 Dod06g2749 06 58634658 58639840 PCT