Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1870 ATGGCGGGTTTGGCTCCCGAGGGAACACAATTTGATGCTCGGCAATATGATTCTAAGATGCATGAGTTGTATGTTCTTGTACTACTTACATTTTTTCGCTCTAAAGCAATACTGGAATTCTTTATTCATGTACTTTTATGTAATTTTTTTTATGTCTTTCAAATCAACTACAGGCTTTCCGCTGATGGACAAGAATTCATCACCTCATATGATGAAGTCCATGATACTTTTGATGCAATGGGATTACAAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGGATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAGCAAGCTCAGTCTGGAACTGGGAAGACAGCAACATTCTGTTCTGGAATTTTGCAGCAGCTTGACTATGGACTGGTTCAGTGTCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAGGTTATGCGAGCACTCGGCGATTTCCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACGAGTGTTCGTGAGGATCAACGCATTCTCCAAGCCGGTGTGCACACTGTTGTTGGCACCCCTGGCCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATCACATAAGGATGTTTGTTTTGGACGAGGCTGATGAAATGCTGTCACGGGGTTTCAAAGACCAGATCTATGACATTTTCCAGCTTCTACCAGCCAAGATTCAGGTTGGAGTGTTCTCTGCTACCATGCCACCAGAAGCACTTGAGATTACAAGGAAGTTCATGAATAAGCCAGTGAGGATCCTGGTAAAGCGCGACGAGCTGACCCTTGAGGGTATCAAGCAGTTTTACGTGAATGTTGAGAGGGAGGACTGGAAGCTAGAGACGCTATGCGACCTTTACGAGACTCTGGCCATCACACAGAGTGTCATCTTTGTGAACACAAGACGCAAGGTGGACTGGCTCACCGACAAGATGCGAAGCAATGATCACACCGTGTCTGCAACGCACGGCGACATGGACCAAAACACTCGCGACATCATCATGCGCGAGTTCCGGTCCGGCTCCTCAAGGGTCCTCATCACCACTGACCTCTTGGCTCGTGGCATAGATGTGCAGCAGGTGTCTCTGGTCATAAACTATGATCTGCCAACTCAGCCTGAGAACTACCTTCATCGCATAGGAAGGAGTGGCCGTTTTGGAAGGAAAGGTGTTGCTATAAACTTTGTCACATTGGATGATTCAAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTCAGTGTTGAGGAGTTGCCATCCAATGTTGCTGATCTGCTCTGA 1347 0.4684 MAGLAPEGTQFDARQYDSKMHELYVLVLLTFFRSKAILEFFIHVLLCNFFYVFQINYRLSADGQEFITSYDEVHDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDFLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVSVEELPSNVADLL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1870 448 Gene3D - 284 448 IPR027417 -
Dod10g1870 448 Gene3D - 65 283 IPR027417 -
Dod10g1870 448 Pfam Helicase conserved C-terminal domain 301 409 IPR001650 -
Dod10g1870 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 276 IPR014001 -
Dod10g1870 448 Pfam DEAD/DEAH box helicase 100 261 IPR011545 GO:0003676|GO:0005524
Dod10g1870 448 SMART ultradead3 94 291 IPR014001 -
Dod10g1870 448 CDD DEADc_EIF4A 79 277 - -
Dod10g1870 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 429 IPR027417 -
Dod10g1870 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 287 448 IPR001650 -
Dod10g1870 448 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 222 230 IPR000629 -
Dod10g1870 448 PANTHER RNA HELICASE 58 448 - -
Dod10g1870 448 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Dod10g1870 448 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 58 448 - -
Dod10g1870 448 SMART helicmild6 328 409 IPR001650 -
Dod10g1870 448 CDD SF2_C_DEAD 288 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1870 Dod-Chr10 40182572 40185563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1870 1 448 Eukaryotic Initiation Factors Gene Family AT1G72730 80.624 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1870 K03257 - gmx:100777628 781.171