LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod10g1857	ATGTCTAGCAAAGTTGGTCAGGTCATCAAGTGCAAAGCTGCGGTGGCATGGGAAGAAGGGAAGCCACTAGTGATTGAAGAAGTAGAGGTAGCCCCTCCACAGGCTGATGAAGTTCGTTTGAAGATACTCTACACCTCTCTTTGCCATTCTGACATTTACTTCTGGGACGGCAAGGGCCGGAAATTGTTATTTCCCCGCATACTTGGTCACGAAGCAGCAGGGATTGTGGAAAGCGTAGGGGAAGGTGTGACTCATCTCAAACCAGGGGACCATGTCCTCCCTGTATTTACTGGAGAGTGTGGGGAATGCCCACAATGTAAGTCTGAAGAGAGCAACTTGTGTGACGTGCTGAGGCTGGACACGGATAGGGGTGTTATGCTCAGTGATGGTCAGTCAAGGTTCTCCAAGAATGGAAAGCCCATTTACCACTTCTTGGGAACCTCTACATTTAGTGAATACACTGTTTCACATTCCAAATGTGTTGCAAAGATCAACCCTGCTGCCCCACTTGACAAAGTTTGTGTTCTCAGCTGTGGAATCTGCACAGGACTTGGTGCCACTTTAAACGTGGCAAAACCAAAGCCTGGTTCCACTGTTGCTGTCTTTGGATTGGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGCTTTCTGGTGCATCAAGAATCATTGGGGTTGATATACTTTCCAGCCGATTTGAACAAGCCAAGAACTTTGGAATCACTGAGTTCTTGAACCCAAAAGATCACGACAAACCTATACAACAGGTAATTGTTGAAATGACCAAGGGAGGAGTTGATCGTGCTCTTGAATGCACTGGAAGCGTCGATGCTGCAATTTCAGCATTTGAATGTGTTCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTCTGCCTAAAGATGATGATGTATTCAAAACCAAGACCATCAATTTCTTGTATGAGAGGACCGTTAAGGGTACCTTCTATGGAAACTACAAACCGGTCTCGGATATTCCAGCTGTTGTGGAGAAGTACATGAACAAAGAGCTAGACCTGGATAAATTCATCACTCACTCAATCACATTCTCAGAGATCAACAAATCATTCGAATACATGCTGAAAGGAGAGTCAATCAGGTGCCTCATCCGCATGGAAGGCTGA	1143	0.4619	MSSKVGQVIKCKAAVAWEEGKPLVIEEVEVAPPQADEVRLKILYTSLCHSDIYFWDGKGRKLLFPRILGHEAAGIVESVGEGVTHLKPGDHVLPVFTGECGECPQCKSEESNLCDVLRLDTDRGVMLSDGQSRFSKNGKPIYHFLGTSTFSEYTVSHSKCVAKINPAAPLDKVCVLSCGICTGLGATLNVAKPKPGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDILSSRFEQAKNFGITEFLNPKDHDKPIQQVIVEMTKGGVDRALECTGSVDAAISAFECVHDGWGVAVLVGLPKDDDVFKTKTINFLYERTVKGTFYGNYKPVSDIPAVVEKYMNKELDLDKFITHSITFSEINKSFEYMLKGESIRCLIRMEG*	381

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod10g1857	380	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	69	83	IPR002328	GO:0008270\|GO:0016491
	Dod10g1857	380	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	169	342	IPR036291	-
	Dod10g1857	380	CDD	alcohol_DH_plants	9	377	-	-
	Dod10g1857	380	Pfam	Alcohol dehydrogenase GroES-like domain	36	163	IPR013154	-
	Dod10g1857	380	PANTHER	ALCOHOL DEHYDROGENASE	4	377	-	-
	Dod10g1857	380	Gene3D	-	20	370	-	-
	Dod10g1857	380	Pfam	Zinc-binding dehydrogenase	206	328	IPR013149	-
	Dod10g1857	380	PANTHER	ALCOHOL DEHYDROGENASE-RELATED	4	377	-	-
	Dod10g1857	380	Gene3D	-	183	321	-	-
	Dod10g1857	380	SUPERFAMILY	GroES-like	5	186	IPR011032	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod10g1857	Dod-Chr10	40005256	40008275	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod10g1857	36	368	Monolignol Biosynthesis Gene Families	AT1G72680	25.740	1.44e-13	69.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod10g1857	K18857		-	gmx:100800668	634.795

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