Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1855 ATGGAGGGACGAGGTCGCTCTGTGGAAGACATATTCGAAGATTTCAAGGGCCGAAGAGCTGCCATCATCAAAGCCCTTACCACCGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAATGGGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTGGTTGCTGTCCATAGTGATACATGGCTACTTTCTCTTGCCTTCTACTTTGGAGCCAGATTTGGGTTTGATAAAACTGACAGGAAACGGCTATTCAATATGATTAATGAACTCCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAAAAACAAGTTAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGTGCGAGCTTCTGAAGCTCAGGTTAGACAGTCAAAGGCAATCCAACCAAAAGATGAGGATGAAGGACCGGATGAGCAAGATGATGATGATCATGGAGATGCCTTTTGTGGGGCATGTGGTGAGAGTAATGGTGCTGATGAGTTCTGGATTTGCTGCGATGTCTGCGAGAAGTGGTTCCATGGTAAATGCGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGGGCTCGCTAA 747 0.4458 MEGRGRSVEDIFEDFKGRRAAIIKALTTDVEDFYNQCDPEKENLCLYGLPNGQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFGFDKTDRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKVRASEAQVRQSKAIQPKDEDEGPDEQDDDDHGDAFCGACGESNGADEFWICCDVCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1855 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Dod10g1855 248 MobiDBLite consensus disorder prediction 141 171 - -
Dod10g1855 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 248 - -
Dod10g1855 248 Pfam PHD-finger 195 245 IPR019787 -
Dod10g1855 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Dod10g1855 248 PANTHER CPG BINDING PROTEIN 1 248 IPR045104 GO:0006355|GO:0042393
Dod10g1855 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Dod10g1855 248 CDD PHD_AL_plant 195 245 IPR044104 -
Dod10g1855 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Dod10g1855 248 MobiDBLite consensus disorder prediction 141 189 - -
Dod10g1855 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Dod10g1855 248 SMART PHD_3 195 243 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1855 Dod-Chr10 39987375 39991750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1855 6 248 Alfin-like Transcription Factor Family AT3G42790 76.543 1.28e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dod10g1855 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1855 - - gmx:100794662 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2150 06 44800671 44805062 Dod10g1855 10 39987375 39991750 ECH
Dod10g1855 10 39987375 39991750 Dod10g1855 10 39987375 39991750 ECH
Dod10g1855 10 39987375 39991750 Dod06g2150 06 44800671 44805062 PCT