Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1854 ATGAAGTGCTTATGTGAGAAAGACTCTGGTCTATGTTCTGCTCGTTCAACTTTCACCCGTGTTCTTGGATGCCCATCATGGGGGAATCGTTCTGAATCTGAAATCCACCAATCATCTTGGGCCAAAAATTTGAGCTTGGAGGTGGAGGTTCTGCCACGACAATGTCATAAGAGTAAGCCTCTGAGTTTTCAATTTCAAGAACAAGATTCATCTTCAACTCAATCAAGCAGTCAATCTTATCCTGAAGTTGGTTCAGCACAATCAGGTCAAATTTCTATCCAGCATAGCATTTCTTCTGCTTGTTCAACACTTAGTAGAACTGAGGAGAAGAGTGCAGTTGGTCACATCAGGTCTTCTACGGGGAGTCTTGATTTTGCCTTCCCTCCTCCAGAACTGGATTGCAGCCAATCACTTGCTCCTATTGCTTTCCACTATACTGATCCGTGGTATAGTGGCGTACTAGCTGCTGCATATGGCCAGCAGTCTAAGCTGATGGGAAGTGCTCCAGTTCGAATTCCTCTGCCACTTGATCTTAGAGAAGAACCAATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGAGCCAAACTTGAAGCACATAACAAAAGCAAAGATCGGAAACCATATCTTCACGAATCCCGGCATCTACATGCATTAAAGAGAGCTAGAGGTGCCGGCGGGCGCTTTCTCAATACTAAGAAGCTCCAAGAATCAAAGCATCCTTCAGCAAACCATGGCTCACATGTTAGCAGTCATACTCATTTGAATCTGAATGGAAATGTGTCACAATCTAAAATGTATCAGGTAGAAAACCACCGAGATAGAGCTTCCATCACCGCCTATTCTGATGTCACCTGTGCATCTGGATACCATTCTTACATTGTAAGGGATATGCAGGATTATACAGCTGATAAGGGTGGTGGCGGTGCGAATCATCGCCGTGTATCTGTCCTCATGTAA 978 0.4417 MKCLCEKDSGLCSARSTFTRVLGCPSWGNRSESEIHQSSWAKNLSLEVEVLPRQCHKSKPLSFQFQEQDSSSTQSSSQSYPEVGSAQSGQISIQHSISSACSTLSRTEEKSAVGHIRSSTGSLDFAFPPPELDCSQSLAPIAFHYTDPWYSGVLAAAYGQQSKLMGSAPVRIPLPLDLREEPIYVNSKQYHAILRRRQYRAKLEAHNKSKDRKPYLHESRHLHALKRARGAGGRFLNTKKLQESKHPSANHGSHVSSHTHLNLNGNVSQSKMYQVENHRDRASITAYSDVTCASGYHSYIVRDMQDYTADKGGGGANHRRVSVLM* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1854 325 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Dod10g1854 325 Gene3D - 179 240 - -
Dod10g1854 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 24 305 IPR001289 GO:0003700|GO:0006355
Dod10g1854 325 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 24 305 - -
Dod10g1854 325 MobiDBLite consensus disorder prediction 242 263 - -
Dod10g1854 325 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Dod10g1854 325 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Dod10g1854 325 SMART cbf3 178 238 IPR001289 GO:0003700|GO:0006355
Dod10g1854 325 MobiDBLite consensus disorder prediction 248 263 - -
Dod10g1854 325 MobiDBLite consensus disorder prediction 66 85 - -
Dod10g1854 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 235 IPR001289 GO:0003700|GO:0006355
Dod10g1854 325 ProSiteProfiles NF-YA/HAP2 family profile. 179 238 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1854 Dod-Chr10 39975867 39979919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1854 26 303 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.955 2.17e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dod10g1854 CBFB_NFYA 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1854 K08064 - gmx:100500765 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1854 10 39975867 39979919 Dod10g1854 10 39975867 39979919 ECH
Dod03g3125 03 63846630 63850280 Dod10g1854 10 39975867 39979919 PCT