Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1844 ATGGAATACCCTTTCTCCCCTAAGGGGAGAGGAGCTGGGTACTGGGCATCTCCTAGAGCACAGTTGGATGGATCAACATCATTAGATGGCGGAATGAGTAATTCACTTTCAGATGATATTCCTAATAGCTTCTCCGAGGCCATGAGCTTTGATCCTTATGCCGGTTTGTGCAATAGCCCATCCATGACTGATCAGGTTTTGGCCAGTGTGCTTACATCATTTCCCTCAGTACCATATCCATCCCCCAGTGGATTCAATCTAGAGGAACAGAGCTGTGGGCAATTGTTTATGACAGAAGTTGGTGGAAGTTACAATGGCAAGGAAAGCTCGTCCCCTAACTACGGGGAGAAAGTTGTGTTTCAACAAATGGACCCCCTACTTGGTTTCTTTGATGATGTAGATGATGCAAATAACTTAAATTCTAAGCAAAAAATTAGTGGCTCTTCTCAACCGCTTGATACCTTTGATATTGGCAATTACATAATCTCTAGGCCCACCAGTTTGTCACTTGATGAGAGAATGTTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAGGTTTGGGTTCCCATGAAGCATGGTGACCAATTCATCTTGAGCACAACTGAGCAACCTTATTTGCTAGACCAAATGCTTGCCGGGTACCGTGAAGTGTCAAGGACTTTTACATTTTCTGCAGAAGGAAAATTGGGTTCTTTCCAAGGACTTCCTGGTCGTGTTTTTATCTCTAGAGTTCCTGAGTGGACTTCCAATATTGGTTTTTACAATAACACTGAGTACTTGAGGATGGATCATGCTATTAAACATGAGGTTCGTGGATCAATTGCCTTTCCCATATCTGATATGCAATCTGAACTGCCTTGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGTCTGATTTTGACAAAGAAATGGAAACTGTTTGTCATGCACTCCAGAACGTAAATTTGACAACTACTATGCCTCCTCGACTTCTTCCCCAGTGTCTTTCAACCAACAAACGAGCTGCTTTAACAGAGATAGTTGATGTCCTACGGTCTGTGTGTCATGCGCATAGCTTGCCACTGGCACTGACATGGATTCCCTGTTGTTACACTGAAGCCACCGGAGGCCAAGACACACAGGTACACGTTAAAGAGGGTCATTCAAGTCCTACTGAAAAATGCATATTGTGCATCGAAGAAGCGGCTTGTTATGTAACTGATAGAGCTATGGAAGGATTTGTTCATGCATGCATTGAACATCATCTTGAGGAAGGGAAAGGTATTGCTGGGAAAGCTCTCCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGGCATATGATATTAGTGAATATCCACTTGTCCATCATGCCAGAAAATATAATTTGAATGCTGCTGTTGCAATTAGGCTGAGGAGTGCTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTAAATATGAAAGGGAGTTCAGCACAGCAACTTTTATTAGACAACCTTTCAGTTACCATGAAGAAAATTTGTAGGAGTTTGAGGACAGTTTCTGATGCTGAATTATCAAGAATAGAAGGCTCACAAGTGGGATTTGAGAAGAAAAACGTCCCCAGATTTTTTCCTATGTCTAGGAGTAACTCTCAAAAACCATTGATAAACGATAACCATGACTCAGTCCATGAGATGTCCATCAAGGCACCTAACCTGAGAAACAATGGAATAGAGCCTTCTCATAACCAGGAAACAAATGGTATAAGAAGGCAGGTGGAGAAAAGGAGATCAGAGAAGAACGTTAGTTTGAGTGTTCTCCAACAATACTTTTCTGGTACTCTGAAGGATGCTGCTAAGGGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATCAAGAAAGTGAACCACTCATTAAAGAAAATACAGACTGTGCTCGACTCCGTCCAGGGAGTGGAAGAAGGGTTGAAGTTTGATCCCTCAATGGGGGCAATTGTGTCAGGAGGGTCAATCATCCAAGAACTTGATGCACATAAGACTCTTATGTTCCCTGAGAAAAGTACTATAAAAGACCGTGAGCCTCTTACTGCCAAAGAAAAGGATAAAAGGGTTCTGAACAGGGCTGGTTTGGAAGTAGAAAAACCTAAAAATTCAAGTTCCTTGATTGATGGGGATAATGGAGTTGCTGAACTTAACCACCCTACTTCTTCAGGCTTGACAGACTCATCTAATGGCTCTAAGAGCTTTGAGAACCAGGAGCATTCCAAAGGCAAATCAACCATTGTTGATGGTAGTGGGTCAAAAATTCATGTCAAAGCTACCTATGGAGAAGACACGGTTCGTTTCAAGTTTGATCAATCTTCGGGGGGTTGTTTCAAGCTATATGAAGAAGTTGCAACCAGGTTCAAATTACAAAACGGGTCATTCCAGCTCAACTATCTAGATGATGAAGAGGAGTGGGTGATGTTGTTGGATGACTCAGATTTGCAGGAGTGCCTTGAAATATTGGATGAGATTGGCACACGTAGTGTTAAGTTTCTTGTCCGTGACATGGCATGCAATTTAAGCAGCTCCAGCAGTAGCAGTTGCTACCTGTGA 2643 0.4241 MEYPFSPKGRGAGYWASPRAQLDGSTSLDGGMSNSLSDDIPNSFSEAMSFDPYAGLCNSPSMTDQVLASVLTSFPSVPYPSPSGFNLEEQSCGQLFMTEVGGSYNGKESSSPNYGEKVVFQQMDPLLGFFDDVDDANNLNSKQKISGSSQPLDTFDIGNYIISRPTSLSLDERMLRALSFFKESAGGGILAQVWVPMKHGDQFILSTTEQPYLLDQMLAGYREVSRTFTFSAEGKLGSFQGLPGRVFISRVPEWTSNIGFYNNTEYLRMDHAIKHEVRGSIAFPISDMQSELPCCAVLELVTTKEKSDFDKEMETVCHALQNVNLTTTMPPRLLPQCLSTNKRAALTEIVDVLRSVCHAHSLPLALTWIPCCYTEATGGQDTQVHVKEGHSSPTEKCILCIEEAACYVTDRAMEGFVHACIEHHLEEGKGIAGKALQSNHPFFYPDVKAYDISEYPLVHHARKYNLNAAVAIRLRSAYTNDDDYILEFFLPVNMKGSSAQQLLLDNLSVTMKKICRSLRTVSDAELSRIEGSQVGFEKKNVPRFFPMSRSNSQKPLINDNHDSVHEMSIKAPNLRNNGIEPSHNQETNGIRRQVEKRRSEKNVSLSVLQQYFSGTLKDAAKGIGVCPTTLKRICRQHGISRWPSRKIKKVNHSLKKIQTVLDSVQGVEEGLKFDPSMGAIVSGGSIIQELDAHKTLMFPEKSTIKDREPLTAKEKDKRVLNRAGLEVEKPKNSSSLIDGDNGVAELNHPTSSGLTDSSNGSKSFENQEHSKGKSTIVDGSGSKIHVKATYGEDTVRFKFDQSSGGCFKLYEEVATRFKLQNGSFQLNYLDDEEEWVMLLDDSDLQECLEILDEIGTRSVKFLVRDMACNLSSSSSSSCYL* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1844 880 PANTHER PROTEIN NLP8 738 878 IPR045012 GO:0003700
Dod10g1844 880 Pfam PB1 domain 785 865 IPR000270 GO:0005515
Dod10g1844 880 ProSiteProfiles PB1 domain profile. 783 866 IPR000270 GO:0005515
Dod10g1844 880 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 738 878 - -
Dod10g1844 880 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 714 - -
Dod10g1844 880 MobiDBLite consensus disorder prediction 734 765 - -
Dod10g1844 880 PANTHER PROTEIN NLP8 5 714 IPR045012 GO:0003700
Dod10g1844 880 SMART PB1_new 783 866 IPR000270 GO:0005515
Dod10g1844 880 Gene3D - 780 864 - -
Dod10g1844 880 MobiDBLite consensus disorder prediction 730 778 - -
Dod10g1844 880 ProSiteProfiles RWP-RK domain profile. 585 670 IPR003035 -
Dod10g1844 880 Pfam RWP-RK domain 602 650 IPR003035 -
Dod10g1844 880 SUPERFAMILY CAD & PB1 domains 777 867 - -
Dod10g1844 880 MobiDBLite consensus disorder prediction 573 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1844 Dod-Chr10 39882832 39888944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1844 1 880 NLP Transcription Factor Family AT2G43500 48.431 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod10g1844 PB1 2.1e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1844 - - aip:107613413 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1844 10 39882832 39888944 Dod10g1844 10 39882832 39888944 ECH
Dod10g1844 10 39882832 39888944 Dod03g3061 03 63340026 63346287 PCT