Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1832 ATGGCGCCTCCTCCGTTGTCCAAATCCTCTGACACACTCTTCGTCGGGAACTTATCCCCCGCCGTCACCGCCTCCGAACTCATGCGCCTCGTCACCCGTTACTCCCCTCTCGACTGCCTCACCTTATCGTATTCCTCCTCCCGCTCCTCCTTCGCCTTCCTCTTCTTCCGCCGCGTCCCTGACGCCAAGGCTGCTAAGCTCGCCCTTCGTGGCGCCGCTCATCTCCGCGGAAGCAATCCCCTCCGTATCGAGTTCGCCAGACCGGCAAAGCCATGTAAACAGCTGTGGGTGGGTGGTGTTGGCAGTGCTGTTACGATGGAAGCATTGGAAGCGAGGTTTCGAAGTTTTGGAAGAGTTGAGGATTTTAGGTTCTTCCGAGACCGGAACACAGCGTATGTTGAGTTCGTCAGTTTGGAGGAAGCGACTCGAGCCGTCAAAGCAATGAATGGGAAGCCTTTTGGCGGTGACAAGATTCGCGTAGACTTCCTGAGGTCTACCATAAGACATTCACAAATTTCCATGGGGAGGGACAGTCAACCCAGTAATGTTTTGTGGATAGGTTTTCCTCCTTCTTTACATATTGCTGAACAAATGCTCCATAATGCCATGATTTTATTTGGAGAAATCGAGAGAATCAAGAGTTTTCCTTCAAGACATTGTTCGTTAGTTGAATTTAGAAGTGTTGATGAAGCTCGGTGTGCCAAAGAGGGTCTTCAAGGACAGCTTATTGATCCTCGCATAACAATTATGTACTTGAGCAGTGAGCTGGCACCTGGCAGAGATTACCCTGATTTTAATCCTGGAACCAAAGGGCTGCAGCCTGATGTGTTACTAAATGAACGTCCATTTCAACCATTACAGCTGGATGGATTTGGTCATAATCGTCTATTGGCTAACACTGATGATCACAGATTACGACAAGAACAAACATCTCCAATTGATCCAGTCACTGATGGAGTACATGGTTCTTTTCATCCTGAGTTCGATCATATGTGGCGTGGAATTATTGCTAAAGGGGGAACACCTGTTTGTCGTGCTAGATGTATGCCTATTGGGAAAGGGATAGGGACTGAGCTTCCTGATGTTGTTGATTGCACAGCTAGGACAGGATTGGACATGCTTGCCGTACACTCTGCTAATGCAATTGGTTTTGACATTGTTTACTTTCTCCCGGATAGTGAAGATGATTTTGCGTCCTTCACTGAATTCATCAGCTACCTGAAACAAAACAATTGTGCTGGTGTTGCAAATTTGGTTGATGACACCACTTTATTCTTGGTACCCCCTTCTGATTTCTTGACTAAGGTTTTGAAAGTCACAGGACCAGAACGGGTATATGGTGTGGTGTTTAAATTTCCGGTTGTTCCGAGGAGCACACCAATGCAAAAATCAATGCATTCTGTTCATCTTGAGCATGCTTCACCTAATGCTCTTTCTGCATCCCAAGCTGGAGTTGCATTAACACCTGAGCTCATTTCCACTTTAACTTCTCTACTCCCTGCAACAACACAATCATCTGTATCAGAAATTGCAAAGACGGCAATAAGCTCCTCCTCAACTGTGAACTCACCATTTCCTTCCGTTGCAACCACTGATGGAAATCAATCTCATCATCATCAAATTGCGGATCTCCCTGGTCATCCTTCTCAACAGTTTGGAAGTAGGTATAACATTCTCAGCACTCAATATCAGCCCTCTCTGCCATCACCTACTCATGGCCTCCCTGCTCAAGCAGTCTCTTGTAGTTCTTATTTCCAAGACACAGCAGCAAGCCTGCAGCTGCAAGGTGCCGTTTCATCTAGACCAATTACTAATTGCACCATAACTTGTCAAAGTGGCCAGGTAGCTGTCTTCTCTCAATGCAGTCAGCAGTATCAGGCTGAAGTCTCCTCCAGCACCCAGAAAGCCTATGAAATAGATCAAAGAACAGATGCCTCTCTTTTATATGCTTCTCAGACATTCCAGAAACATGATAATTTATTTTCCTCATCCAGTCAAGTTGCTAATCCTTCAAAGCAACAAACTGTGATGCCCTATTCAGTGGACAAAGTTAACTCTGAACTTTCAAATCTACAACATCAGTCTGCTCTCTCTAGAGTTGGTCAGGAGTCATCAGAAGTGGAGGCTGATAAGAACCAGAGGTACCAGTCTGCACTGAAGTTTGCTAGGAACCTTCTTCTTCACATACAGCAACAGCAAACCCAAGGAGTGCATGAGCCAGGAAATCAACATTGA 2235 0.4595 MAPPPLSKSSDTLFVGNLSPAVTASELMRLVTRYSPLDCLTLSYSSSRSSFAFLFFRRVPDAKAAKLALRGAAHLRGSNPLRIEFARPAKPCKQLWVGGVGSAVTMEALEARFRSFGRVEDFRFFRDRNTAYVEFVSLEEATRAVKAMNGKPFGGDKIRVDFLRSTIRHSQISMGRDSQPSNVLWIGFPPSLHIAEQMLHNAMILFGEIERIKSFPSRHCSLVEFRSVDEARCAKEGLQGQLIDPRITIMYLSSELAPGRDYPDFNPGTKGLQPDVLLNERPFQPLQLDGFGHNRLLANTDDHRLRQEQTSPIDPVTDGVHGSFHPEFDHMWRGIIAKGGTPVCRARCMPIGKGIGTELPDVVDCTARTGLDMLAVHSANAIGFDIVYFLPDSEDDFASFTEFISYLKQNNCAGVANLVDDTTLFLVPPSDFLTKVLKVTGPERVYGVVFKFPVVPRSTPMQKSMHSVHLEHASPNALSASQAGVALTPELISTLTSLLPATTQSSVSEIAKTAISSSSTVNSPFPSVATTDGNQSHHHQIADLPGHPSQQFGSRYNILSTQYQPSLPSPTHGLPAQAVSCSSYFQDTAASLQLQGAVSSRPITNCTITCQSGQVAVFSQCSQQYQAEVSSSTQKAYEIDQRTDASLLYASQTFQKHDNLFSSSSQVANPSKQQTVMPYSVDKVNSELSNLQHQSALSRVGQESSEVEADKNQRYQSALKFARNLLLHIQQQQTQGVHEPGNQH* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1832 744 Pfam SPOC domain 325 443 IPR012921 -
Dod10g1832 744 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 288 - -
Dod10g1832 744 PANTHER RNA RECOGNITION MOTIF-CONTAINING 305 467 - -
Dod10g1832 744 PANTHER RNA RECOGNITION MOTIF-CONTAINING 464 744 - -
Dod10g1832 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 88 IPR000504 GO:0003723
Dod10g1832 744 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 165 IPR000504 GO:0003723
Dod10g1832 744 SUPERFAMILY RNA-binding domain, RBD 174 248 IPR035979 GO:0003676
Dod10g1832 744 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 8 288 - -
Dod10g1832 744 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 305 467 - -
Dod10g1832 744 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 464 744 - -
Dod10g1832 744 SMART rrm1_1 183 250 IPR000504 GO:0003723
Dod10g1832 744 SMART rrm1_1 12 84 IPR000504 GO:0003723
Dod10g1832 744 SMART rrm1_1 94 161 IPR000504 GO:0003723
Dod10g1832 744 Gene3D - 3 88 IPR012677 -
Dod10g1832 744 Gene3D - 170 257 IPR012677 -
Dod10g1832 744 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 159 IPR000504 GO:0003723
Dod10g1832 744 SUPERFAMILY RNA-binding domain, RBD 12 164 IPR035979 GO:0003676
Dod10g1832 744 Gene3D - 89 169 IPR012677 -
Dod10g1832 744 CDD RRM3_Spen 95 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1832 Dod-Chr10 39772372 39776017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1832 12 246 Eukaryotic Initiation Factors Gene Family AT3G16380 24.715 1.35e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1832 - - rcn:112189861 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1832 10 39772372 39776017 Dod03g3047 03 63227206 63237899 PCT