Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1824 ATGAAGATCCAGTGTGATGTGTGTGAGAAAGCACCGGCAACAGTGATTTGTTGCGCGGATGAAGCGGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTGCTTCTTCAATGCCTTTCAAACAAGCTTCCCAAATGTGACATATGCCAAGACAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCGATCCACTCAGCTGGAAGCCTTTCCGCAAACCACCAGCGATTCCTTGCTACCGGTATCCGAGTGGCCATGAGCTCTAATTGCACCAAAGAAAATGAAAAGAATCACTTGGAGCCACCTAATAATCGGAATCCACAACAAGTTTCTTCTATGAAAGCTCCTCCTCAGCAAGTGCCTAACTTCCCATCTTCTTGGGCTGTTGATGACTTATTGCAACTAACAGGCTTTGAATCCCCTGACAAAAAGGAATCCTTGCAGTTTGGAGAGTTGGAATGGCTGGAAGATGTAGGCCTTTTTGGTGAACAATTTCCTCAGGAAGCCTTGGCTGCTGCCGAAGTTCCTCAGCTTCCAGTAACACATACTAGCAACAATGTCGCCTCATACAGAACCTCCAAGTCCTATATGTCTCACAAAAAGCCTAGGATTGAAGTCATCAATGATGATGATGATGATGAGTACTTCACAGTGCCTGATCTTGGCTGA 729 0.4568 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVAMSSNCTKENEKNHLEPPNNRNPQQVSSMKAPPQQVPNFPSSWAVDDLLQLTGFESPDKKESLQFGELEWLEDVGLFGEQFPQEALAAAEVPQLPVTHTSNNVASYRTSKSYMSHKKPRIEVINDDDDDEYFTVPDLG* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1824 242 MobiDBLite consensus disorder prediction 112 139 - -
Dod10g1824 242 MobiDBLite consensus disorder prediction 121 139 - -
Dod10g1824 242 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod10g1824 242 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 242 - -
Dod10g1824 242 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 242 - -
Dod10g1824 242 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dod10g1824 242 SMART bboxneu5 52 99 IPR000315 GO:0008270
Dod10g1824 242 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dod10g1824 242 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Dod10g1824 242 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Dod10g1824 242 Gene3D Classic Zinc Finger 1 95 - -
Dod10g1824 242 CDD Bbox1_BBX-like 5 47 - -
Dod10g1824 242 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1824 Dod-Chr10 39734113 39736375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1824 1 163 Orphan Transcription Factor Family AT1G06040 64.118 4.54e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dod10g1824 zf-B_box 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1824 - - gmx:100797515 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1824 10 39734113 39736375 Dod10g1824 10 39734113 39736375 ECH
Dod10g1824 10 39734113 39736375 Dod03g3040 03 63192644 63196400 PCT