Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1787 ATGGAGTCAGATCTTCAGCAACCGAGTTCTTCTGGCTTGACAAGGTACCGATCGGCACCGAGCTCCTTCTTCACCAACGTAATTGACCGTGAGTTCTACGAACACGTTTTCAATCGACCCTCAAGCCCCGAAACAGAGCGAGTCTTCTCCAGGTTCATGAATAGTCTCGGTGATGATGGTGCACCAGATGACTCACTACTCACTCCGAATTTCTCATCAGCTAGTTCTGCGGTGAAGCAAGAAGATATTAGCCAGCAGGATCAGGTTATTCCTTCCATCAACAACAATGAACAAGTGGTTCTCCAGCAACAGCAGCAACAACAGCAAGAGAACAACATGAATAACTACAACTCTGGGAGTCATGGTTTTAGCTACCAAAGCTCAGCGAGACCACCTTTGCCGAATCAGAACCTCAACAACTCAGGTATGGAAGGAAGGTATATGAAGACTGGTGGTGGAAATCATTCTAGTCTTGCAAGGCATAATAGCTCACCAGCTGGGCTATTTTCGCAAATAAACATTGAAAATGGCTATGTTGGTATGAGAGGCATGGGAACTTTAGGTGCTGTTAATAACACCATCGAAGAAGCAAAGTTTTCTACTGGAAGGAGGTTGAAGAATAATCCACAAAGCTACTCGTCGCGGGCGCTAATGTCGTCAATAGCTGAAATTGGGGACAAGGACAACAGAGAAGACCATCAAGACAGTGAAGCTTTTGGTGAAAATAACGATTATGTCACAGATTTCCCACCCTGGGATGACTCTGTAGCCATGAATGACAGTGTTGCTGGTCTAAAAAGATTCACAAGTGATGATGCAAGACTATTTTCTTCTGGTTTAAATGCAGCTGAGACTCAGAATGAAACAAGAGGACAAGCTCCTGCTCCTTTGGTGAGTCACCTAAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTCCTGCAGTTCTCAGATTCTGTTCCGTGCAAAATTCGGGCCAAGAGGGGCTGTGCCACTCACCCAAGAAGTATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTGGTCCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTGGCTGTCGATTACATCAAGGAACTTCAAAAGCAAGTTCAGGTACGATTAAAAAAGGAACAACTTATCTCAAATTCTCAATTCTCAGCGATGTCCATATGCCATGTTTAG 1233 0.442 MESDLQQPSSSGLTRYRSAPSSFFTNVIDREFYEHVFNRPSSPETERVFSRFMNSLGDDGAPDDSLLTPNFSSASSAVKQEDISQQDQVIPSINNNEQVVLQQQQQQQQENNMNNYNSGSHGFSYQSSARPPLPNQNLNNSGMEGRYMKTGGGNHSSLARHNSSPAGLFSQINIENGYVGMRGMGTLGAVNNTIEEAKFSTGRRLKNNPQSYSSRALMSSIAEIGDKDNREDHQDSEAFGENNDYVTDFPPWDDSVAMNDSVAGLKRFTSDDARLFSSGLNAAETQNETRGQAPAPLVSHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQKQVQVRLKKEQLISNSQFSAMSICHV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1787 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 383 IPR011598 GO:0046983
Dod10g1787 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 388 - -
Dod10g1787 410 MobiDBLite consensus disorder prediction 102 144 - -
Dod10g1787 410 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 388 - -
Dod10g1787 410 Gene3D - 334 405 IPR036638 GO:0046983
Dod10g1787 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 392 IPR036638 GO:0046983
Dod10g1787 410 SMART finulus 339 389 IPR011598 GO:0046983
Dod10g1787 410 MobiDBLite consensus disorder prediction 102 148 - -
Dod10g1787 410 Pfam Helix-loop-helix DNA-binding domain 338 384 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1787 Dod-Chr10 39051701 39055429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1787 6 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.712 5.88e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod10g1787 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1787 - - gmx:100805812 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1787 10 39051701 39055429 Dod10g1787 10 39051701 39055429 ECH
Dod10g1787 10 39051701 39055429 Dod03g3010 03 62433953 62438505 ECH
Dod01g2291 01 60849117 60851546 Dod10g1787 10 39051701 39055429 ECH
Dod07g1212 07 31716027 31718584 Dod10g1787 10 39051701 39055429 ECH