Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1780 ATGACGGATCCATACTACTCAAATGACTTCAATGGTTGGCTTGACCTCAATTCCCCAACCTTCCTTTTCTCTTCTTCATCATCTTGCTCCAACCCACCATTCTATTTTCCTTCTGGTTATCATCATCATCATAATTGCACAAGTGGCAACATCTCTTTCACTCACCACCACCACCAATCCTCTCCTCCAAGACAAGCCCTCCCTCTCCTTAACCTAAGCCCGACTAGGCGTGAAGATCTAGAATCCTCCTTTGGTGCCATGGAAGTTGACAACAATAACAAGAAGGAGAAGAAGGGGCTAAGCATATCATCCAGCTCTATTGATGATGATAGTGTTACGGTGGCCTTGCACTTAGGGCTTCCAAGCACTGGTTCAGCTGATTTGGGTTCATCAAACATGTATACCTCATCAGAGGTTTCGGACAAAGAAGAAAAAGTGATCACTGTTGATGCTTCTCCCGAGTGCCCATCAAATAGAATCAACAGGGGCCAGTATTGGATCCCTACCCCAGCTCAGATTCTGATTGGTCCAACGCAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAATCACTAAGGGGAACCCAGCCAACAGCTATGCTTAGGCTCCCTTGCTATTGCTGTGCAGCCGGGTGCAAGAACAACATTGACCACCCAAGAGCAAAGCCGCTGAAAGACTTTAGAACCCTTCAAACACATTACAAGAGAAAGCATGGAATAAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTAAGAGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAGCTCTGGTATTGCTCTTGTGGGTCTGACTTCAAGCACAAAAGGTCTCTTAAGGATCATATCAAGGCGTTCGGGAATGGACACAAAGCTTATGGAATTGATTGTCTTGATCAAGATGACGAAGCTGGCTCTGAAATTGAGCAAGAAAATGATCTCTCTAGTCATGGTTGA 1032 0.4506 MTDPYYSNDFNGWLDLNSPTFLFSSSSSCSNPPFYFPSGYHHHHNCTSGNISFTHHHHQSSPPRQALPLLNLSPTRREDLESSFGAMEVDNNNKKEKKGLSISSSSIDDDSVTVALHLGLPSTGSADLGSSNMYTSSEVSDKEEKVITVDASPECPSNRINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAAGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEAGSEIEQENDLSSHG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1780 343 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Dod10g1780 343 Gene3D Classic Zinc Finger 223 311 - -
Dod10g1780 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Dod10g1780 343 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 338 - -
Dod10g1780 343 Gene3D Classic Zinc Finger 179 202 - -
Dod10g1780 343 PANTHER ZINC FINGER PROTEIN WIP2 1 338 IPR043584 GO:0003700|GO:0010468
Dod10g1780 343 SUPERFAMILY beta-beta-alpha zinc fingers 246 284 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1780 Dod-Chr10 38930193 38933026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1780 1 341 C2H2 Transcription Factor Family AT3G57670 53.708 3.17e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod10g1780 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1780 - - gmx:100789416 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1780 10 38930193 38933026 Dod10g1780 10 38930193 38933026 ECH
Dod10g1780 10 38930193 38933026 Dod03g3000 03 62309558 62312117 ECH
Dod01g2277 01 60642953 60645969 Dod10g1780 10 38930193 38933026 ECH
Dod07g1202 07 31363013 31365589 Dod10g1780 10 38930193 38933026 ECH
Dod10g1780 10 38930193 38933026 Dod03g3000 03 62309558 62312117 PCT