Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1770 ATGAGGAAGCCTGAGGCATCTGCTAAAAGCAACGACAAGCAGCTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGACAAGCTAATGAACTACATGCTGAACAATGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGGTTGCAAAGGTGTGGCAAGAGTTGTCGTCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAAAGAGGTGCCATCTCACCCCAAGAGGAGGAACTCATCATTCACTTCCATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCGGCACGCTTACCGGGGCGAACGGACAATGAGATCAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACTTGTCATCCACGACCACAACCTCATCAACTTCACCAAACGCAAGTGAGTCATCGTATGAGCCTAACAAAGACCATAATATTATGGGAGGGTTTATTTCTACGCAACATAGTCAGCATTCAGGGTTTGTGCCTTTGTTCAGTTCATCTCAATCACCATCAATGCAGCCTTCACGTCTCAATACCATGATTGACAGGTCGAATATGTTGGAACATGGACTAATAACCATGCCAGCTACTACAGGGCCATGCTTCTCACAAAGTGGGGTTGACTTAGAAAATGGGGTCGTTGGGAGTGTAAATATTGGGGTAGAAAGGGATATATTTGTAATTCCGCCTCTAGAGAGTGTTAGCACTACTAGTGATCATAGCATGAGGGTAGAGAGTATTAGCAAGAGAGAAGCTAACAACAGTAGTTATTTTGATGATATAAACACTATCCTTAATAACTGCAATATCAGCAACAATAATAGCAGATCTGAGAATAATTGGGTTGGGGTGGAGAATTTATTTCATGAAGAGCTAGCCATGGGAGAGTGGAGCTTGGAGGACTTGATGAAAGACATTTCATCCTTTCCATTACTTGATTTTTCAGTCTGA 960 0.4281 MRKPEASAKSNDKQLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAISPQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTTTTSSTSPNASESSYEPNKDHNIMGGFISTQHSQHSGFVPLFSSSQSPSMQPSRLNTMIDRSNMLEHGLITMPATTGPCFSQSGVDLENGVVGSVNIGVERDIFVIPPLESVSTTSDHSMRVESISKREANNSSYFDDINTILNNCNISNNNSRSENNWVGVENLFHEELAMGEWSLEDLMKDISSFPLLDFSV* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1770 319 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Dod10g1770 319 PANTHER MYB TRANSCRIPTION FACTOR 7 318 - -
Dod10g1770 319 MobiDBLite consensus disorder prediction 122 142 - -
Dod10g1770 319 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Dod10g1770 319 CDD SANT 20 64 IPR001005 -
Dod10g1770 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Dod10g1770 319 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Dod10g1770 319 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Dod10g1770 319 Gene3D - 14 70 - -
Dod10g1770 319 CDD SANT 74 112 IPR001005 -
Dod10g1770 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Dod10g1770 319 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Dod10g1770 319 SMART sant 16 66 IPR001005 -
Dod10g1770 319 SMART sant 69 117 IPR001005 -
Dod10g1770 319 Gene3D - 72 146 - -
Dod10g1770 319 PANTHER MYB DOMAIN PROTEIN 55 7 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1770 Dod-Chr10 38817226 38819524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1770 1 266 MYB Transcription Factor Family AT5G12870 50.000 2.30e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod10g1770 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1770 K09422 - gmx:100786151 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1770 10 38817226 38819524 Dod10g1770 10 38817226 38819524 ECH
Dod10g1770 10 38817226 38819524 Dod03g2989 03 62160985 62164733 ECH
Dod10g1770 10 38817226 38819524 Dod03g2989 03 62160985 62164733 PCT