Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1747 ATGAATTCGGATACCCAACCCGCCGCTACGGCGTCGTTTTGGTGCTACAGCTGCACGCGTTTCGTTCACCTCATGGACGGACACGACGTTGTTTGCCCTCACTGCCAAAGTGGCTTCGTCGAAGAGATCCACGCAGGCCAGTCCCCCGCCATGTCTCTCTTCGCCGACGGCCTTCAAACCTCTCGCCGGCAAGGGTTCCGCCGGAGACGCCGAAACGCCGGTAACCGCTCGCCGTTCAACCCTGTGATCGTTCTCCGTGGACCTGGAGAGGACGGTAATAGCGGTGATAGCGAGAGTTCGACCTTTGAACTGTACTACGACGACGGCGACGGCTCAGGTCTCCGGCCACTTCCGCCGACGATGTCGGAGTTTTTGCTCGGATCGGGATTCGATCGGTTGTTGGAGCAGTTCTCTCAGATCGAGATCAACGGTTTCGGACGGCCGGAGAATCCTCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTGGAGATCGGAGACTCTCACGTGGAAACGGAAACGCACTGCGCCGTGTGTAAGGAAGCTTTCGAGCTTGGTTCGGAGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATCCTTCCGTGGCTGTCGGTGCGGAACTCGTGCCCCGTGTGCCGTCACGAGCTGCCGTCCGACCAGAGCACGGAGGAGGGAAGAGTGAACGGTCAGATCGACGAGGAAGCGGTAGGATTGACCATATGGAGGTTGCCGGGCGGAGGATTCGCCGTCGGGAGATTCTCCGGCGGGCGAAGAGCCGGTGAGAGCCGTTTGCCGGTTGTGTACACGGAGATGGACGGCGGAAGCAGCGGCGGTAACTCGAACGGAGGTTCTAGAAGAATCTCCCGCGCAGTCGGAAGCAGTAGGGTTAGGGAGAGTCGCGGAATTGGAAGGATTTTCCGCAATTTCGTTTCGTTCTTCGGGAGAATTGGATCTAGGTCACGTTCCTCTTCGTCTTCTTCATCTTCTTCGTATTCTGGTTCCGAGCATGGTTCGGCGAGTAGAAGCCACAGCTATTCGAGTTCAGTGTTCAATCGAAACTCTGGGAGAAGAAGAACCCTGGTGTTGGAAGATTGA 1110 0.5802 MNSDTQPAATASFWCYSCTRFVHLMDGHDVVCPHCQSGFVEEIHAGQSPAMSLFADGLQTSRRQGFRRRRRNAGNRSPFNPVIVLRGPGEDGNSGDSESSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGDSHVETETHCAVCKEAFELGSEAREMPCKHLYHSDCILPWLSVRNSCPVCRHELPSDQSTEEGRVNGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRAGESRLPVVYTEMDGGSSGGNSNGGSRRISRAVGSSRVRESRGIGRIFRNFVSFFGRIGSRSRSSSSSSSSSYSGSEHGSASRSHSYSSSVFNRNSGRRRTLVLED* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1747 369 SMART ring_2 177 217 IPR001841 -
Dod10g1747 369 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Dod10g1747 369 MobiDBLite consensus disorder prediction 322 356 - -
Dod10g1747 369 MobiDBLite consensus disorder prediction 273 298 - -
Dod10g1747 369 Pfam Protein of unknown function (DUF1117) 241 358 IPR010543 -
Dod10g1747 369 MobiDBLite consensus disorder prediction 67 100 - -
Dod10g1747 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 307 - -
Dod10g1747 369 CDD RING-H2_RNF126_like 177 218 - -
Dod10g1747 369 Pfam Ring finger domain 176 218 IPR001841 -
Dod10g1747 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Dod10g1747 369 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Dod10g1747 369 SUPERFAMILY RING/U-box 157 224 - -
Dod10g1747 369 MobiDBLite consensus disorder prediction 278 293 - -
Dod10g1747 369 PANTHER OS05G0110000 PROTEIN 9 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1747 Dod-Chr10 38600035 38602787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1747 116 233 C3H Transcription Factor Family AT5G01980 45.378 5.43e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1747 - - aip:107612938 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1747 10 38600035 38602787 Dod10g1747 10 38600035 38602787 ECH
Dod10g1747 10 38600035 38602787 Dod03g2952 03 61793233 61795595 ECH
Dod10g1747 10 38600035 38602787 Dod03g2952 03 61793233 61795595 PCT