Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1728 ATGGCTCTGGCCACCACTAGTGTGCTCTGCATTGTGTCTCTTATTATGTCCTTAATGTGGATGGTTATTGAGGCTCGAATTCCAGGGGTTTACACCGGGGGTGCTTGGCAGAGTGCTCATGCCACCTTCTATGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCATGTGGGTATGGGAACCTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGCACAGCACTGTTCAACAATGGGCTGAGCTGCGGGGCCTGCTTTGAGATCAAGTGCGCAAACGACAGGCAGTGGTGCCACTCCGGCAGCCCCTCCATCTTAATCACTGCAACTAACTTCTGTCCCCCAAACTATGCCCTTCCAAACGACAATGGTGGGTGGTGCAACCCTCCTCGCCCACACTTCGATCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACCGTGCCGGAATCGTACCTGTCGCCTATCGCAGGGTGCCATGCAGAAAGCACGGTGGGATGAGGTTCACCATCAACGGCTTCAGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCGGGTGCAGGGGATATCGTGCGCGCCTACGTGAAGGGGTCAAGAACAGGGTGGATGCCAATGAGCAGGAACTGGGGTCAGAACTGGCAGTCGAGCGCGGTCTTAGTGGGCCAGACCTTGTCCTTCCGGGTCACTGGCAGTGACCGTCGCACCTCAACCTCTTGGAACATTGTTCCACCCAATTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGTGTTTAA 789 0.5551 MALATTSVLCIVSLIMSLMWMVIEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGMRFTINGFSYFNLVLISNVAGAGDIVRAYVKGSRTGWMPMSRNWGQNWQSSAVLVGQTLSFRVTGSDRRTSTSWNIVPPNWQFGQTFTGKNFRV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1728 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Dod10g1728 262 SMART dpbb_1 71 158 IPR007112 -
Dod10g1728 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Dod10g1728 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Dod10g1728 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Dod10g1728 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Dod10g1728 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Dod10g1728 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Dod10g1728 262 PANTHER EXPANSIN-A15 7 261 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Dod10g1728 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Dod10g1728 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Dod10g1728 262 Gene3D - 23 164 IPR036908 -
Dod10g1728 262 PANTHER EXPANSIN 7 261 - -
Dod10g1728 262 SUPERFAMILY Barwin-like endoglucanases 35 186 IPR036908 -
Dod10g1728 262 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Dod10g1728 262 Gene3D - 169 260 IPR036749 -
Dod10g1728 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 168 IPR007112 -
Dod10g1728 262 Pfam Lytic transglycolase 71 158 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1728 Dod-Chr10 38417079 38420074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1728 18 262 Expansin Gene Family AT2G39700 86.122 6.82e-163 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1728 - - gmx:100809139 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1728 10 38417079 38420074 Dod10g1728 10 38417079 38420074 ECH
Dod10g1728 10 38417079 38420074 Dod08g0796 08 9511813 9515631 ECH
Dod10g1728 10 38417079 38420074 Dod03g2936 03 61600627 61603810 ECH
Dod07g1364 07 37114878 37118522 Dod10g1728 10 38417079 38420074 ECH
Dod10g1728 10 38417079 38420074 Dod03g2936 03 61600627 61603810 PCT