Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1715 ATGACCACCACCTATTATCCCAACACCGCCCCGAGATCTGGTGGAGGAGTCATGGAGGAGGAGAAAGCGGGTGGCACAGCTGAGAGGCTGATTGAGGTGGTCAATGAGATATCATTGATCTCTGATTACAAGGCAACGGTGAAGAAGGAGTACTGTAACTTGGCAAGGAGGCTGAAGCTCTTGACGCCATTGTTCGAAGAGATTAGGGACACCAGGGACCCCGTCCCTCAGGAAACTTCCAAGGCCTTGCTCTCCTTGAAAGAAGCCATGGAATCCGCCGAGGACCTTCTCAGATTCGGGAGTGAAGGCAGCAGGATTTACCTCGTCCTTAAGAGGGACCAAATTATGAATAAATTCCACGAGGTGACTGCTCAGTTGGAACAAGCATTAGGGGGGATTTCCTATGATAAGCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTTGCCCAGTTTAGAAGAGCCAAAGGAAGAGTTGATGCAGCTGATGTTGAGCTGCATGAGGATCTCTTGTCCCTTTACGACAAGAGCACTGATGCAGCTACAGATCCAGCTGTTTTAAGAAGATTAGCTGAAAAATTGCAATTGATTGGTATAGCTGATCTTACACAAGAGTCGCTCGCTTTGCATGAGATGGTCGCTGCAACTGGTGGGGATCCAGGGGCAAGCATTGAGAAGATGTCAATGTTGTTGAAGAAGATAAAGGATTATGTACAAACAGAAAATCTAGACAAGGATGATAATGTAGGAGGAAATAGCCTTTCGTCAAGTTGCTGCAAACATGGGACAAATGAAAAGAATCATCAGCCACCTGTAATTCCTGATGATTTTCGATGTCCAATTTCACTGGAATTGATGAAGGATCCTGTCATAGTATCAACAGGACAGACTTATGAGCGTTCTTGTATAGAGAAGTGGTTGGAAGCAGGGCATGGTACATGCCCAAAAACACAGCAGACCCTCTCTAGTACTGTTCTAACACCCAATTATGTGTTACGAAGCCTTATAGAACAATGGTGTGAAGCCAATGGCTTAGAACCTCCAAAACGACCTAGCAGTTCTCGACCCAGTAAATCAGCATCTGCCTGCTCACCAGCTGAACAAGGTAAGATTGAAAATCTTCTTCGAAAGCTCACGTCTGGCAATCCTGAAAACCAGAGATCAGCTGCGGGTGAGATCCGCCTTCTTGCTAAGCGTAATGCAGATAACCGTGTAGCCATTGCTGAAGCTGGTGCTATTCCTCTTCTTGTTGATCTTCTCTGTACACCTGACTCCCGCATCCAAGAGCATGCTGTTACAGCACTTCTGAATCTTTCCATATGTGAAAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTGCCAGGTATAGTCCATGTACTCAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACTCTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTACAATTGGTAATTCAGGAGCCATACCACCATTAGTGACACTGCTGAGTGAGGGTACCCAAAGCGGTAAGAAAGATGCTGCAACAGCACTCTTCAACTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAGTGAGGGCGGGTGTAGTTCCCACGCTTATGCGACTTCTGACAGGACCTGGTGCGGGAATGGTGGATGAAGCATTAGCCATTTTGGCAATATTGGCTAGCCATCCAGATGGGAAGGCCGCCATTGGCACCGCAGAGGCAGTACCTGTATTGGTACAGGTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCGGCTGCTGTTTTGGTGCACCTTTGTTCTAGAGATCAACTCTATATAGCTCAGGCGCAAGAGCTGGGGCTGATGGGTCCATTGTTGGAATTAGCTCAAAATGGCACAGATAGAGGCAAAAGAAAGGCTGCACAATTGTTAGAGCGAATGAGCAGGTTCCTAGAACAGCAACAGCAACAGCAGGAGGAGGAAGAGGAAGTTCAAACACAAACTGAATTTCAAGCTCAGAACCAGGATACCCCTCTTCCTCCTATCATTACTAACCTTGATGATAGCTGA 2070 0.4638 MTTTYYPNTAPRSGGGVMEEEKAGGTAERLIEVVNEISLISDYKATVKKEYCNLARRLKLLTPLFEEIRDTRDPVPQETSKALLSLKEAMESAEDLLRFGSEGSRIYLVLKRDQIMNKFHEVTAQLEQALGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDAADVELHEDLLSLYDKSTDAATDPAVLRRLAEKLQLIGIADLTQESLALHEMVAATGGDPGASIEKMSMLLKKIKDYVQTENLDKDDNVGGNSLSSSCCKHGTNEKNHQPPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTVLTPNYVLRSLIEQWCEANGLEPPKRPSSSRPSKSASACSPAEQGKIENLLRKLTSGNPENQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVDLLCTPDSRIQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGNSGAIPPLVTLLSEGTQSGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTGPGAGMVDEALAILAILASHPDGKAAIGTAEAVPVLVQVIGNGSPRNKENAAAVLVHLCSRDQLYIAQAQELGLMGPLLELAQNGTDRGKRKAAQLLERMSRFLEQQQQQQEEEEEVQTQTEFQAQNQDTPLPPIITNLDDS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1715 689 MobiDBLite consensus disorder prediction 651 689 - -
Dod10g1715 689 SMART arm_5 609 649 IPR000225 GO:0005515
Dod10g1715 689 SMART arm_5 526 566 IPR000225 GO:0005515
Dod10g1715 689 SMART arm_5 403 443 IPR000225 GO:0005515
Dod10g1715 689 SMART arm_5 567 607 IPR000225 GO:0005515
Dod10g1715 689 SMART arm_5 485 525 IPR000225 GO:0005515
Dod10g1715 689 SMART arm_5 444 484 IPR000225 GO:0005515
Dod10g1715 689 MobiDBLite consensus disorder prediction 353 369 - -
Dod10g1715 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Dod10g1715 689 MobiDBLite consensus disorder prediction 348 370 - -
Dod10g1715 689 PANTHER U BOX DOMAIN-CONTAINING 24 665 - -
Dod10g1715 689 MobiDBLite consensus disorder prediction 667 689 - -
Dod10g1715 689 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 665 - -
Dod10g1715 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Dod10g1715 689 CDD RING-Ubox_PUB 280 322 IPR045210 -
Dod10g1715 689 Gene3D - 26 135 IPR036537 GO:0007166
Dod10g1715 689 Coils Coil 640 664 - -
Dod10g1715 689 SUPERFAMILY ARM repeat 372 656 IPR016024 -
Dod10g1715 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Dod10g1715 689 MobiDBLite consensus disorder prediction 1 21 - -
Dod10g1715 689 Gene3D - 357 679 IPR011989 -
Dod10g1715 689 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
Dod10g1715 689 Pfam Armadillo/beta-catenin-like repeat 486 524 IPR000225 GO:0005515
Dod10g1715 689 Pfam Armadillo/beta-catenin-like repeat 403 442 IPR000225 GO:0005515
Dod10g1715 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515
Dod10g1715 689 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Dod10g1715 689 SUPERFAMILY RING/U-box 268 352 - -
Dod10g1715 689 Pfam Neurochondrin 539 659 IPR008709 -
Dod10g1715 689 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1715 Dod-Chr10 38283540 38288766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1715 18 677 U-box Gene Family AT3G46510 69.760 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1715 - - pvu:PHAVU_011G064700g 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1715 10 38283540 38288766 Dod10g1715 10 38283540 38288766 ECH