Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1703 ATGTCTGCGGCTCTCGATATGACCCTCGATGACATCATTAAGAATAACAAGAAGTCCGGATCCGCCGCCTCCAGGGGCCGCGCCCGACAATCCGGATCCGGACCCGGATCCGGACCCGCCCGCCGCTTCCCCAACCGAGCCGCCAACCGCGCCGCACCCTACACCACCGCCAAGGCGCCGGAGGCAGCGTGGCAGCACGACATGTATGCAGATCAGGGACTGGGGGCGTATCCTGCCCAGGGTGGTCGTGCGTCTTCCATTGAAACAGGGACGAAGCTCTACATTTCGAATTTGGATTACGGTGTTTCCAACGATGATATCAAGGAATTATTTTCTGAAGTCGGTGACCTGAAACGGCATACCGTCCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCGCGACGAGCTGATGCTGTAGCTGCAGTAAAGAGGTACAACAACGTCCAACTAGATGGGAAACCAATGAAGGTAGAGATTGTTGGAACAAACATTGCAACACATGCTGTCGCTCCTGCTGCAAATGGAGGTTTTGGAAATTCAAATGTAGTTCCCAGAAGTGGACAAGGGAGAAGTGGAGGACCAGTAGGACGGCCACGTGGTGGAGGAGGTAGAGGGCGTGGTGCTCGAAGAGGTCGAGGGCGTGGAAGAGGTCCTGGTGAAAAAGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTACCATGCAGAGGCAATGCAATTAAACTGA 747 0.5395 MSAALDMTLDDIIKNNKKSGSAASRGRARQSGSGPGSGPARRFPNRAANRAAPYTTAKAPEAAWQHDMYADQGLGAYPAQGGRASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAVAPAANGGFGNSNVVPRSGQGRSGGPVGRPRGGGGRGRGARRGRGRGRGPGEKVSAEDLDADLEKYHAEAMQLN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1703 248 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 247 - -
Dod10g1703 248 MobiDBLite consensus disorder prediction 219 241 - -
Dod10g1703 248 MobiDBLite consensus disorder prediction 14 31 - -
Dod10g1703 248 MobiDBLite consensus disorder prediction 14 59 - -
Dod10g1703 248 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 247 - -
Dod10g1703 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Dod10g1703 248 SMART rrm1_1 92 164 IPR000504 GO:0003723
Dod10g1703 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Dod10g1703 248 Pfam C-terminal duplication domain of Friend of PRMT1 191 242 IPR025715 -
Dod10g1703 248 CDD RRM_THOC4 91 165 - -
Dod10g1703 248 SUPERFAMILY RNA-binding domain, RBD 34 165 IPR035979 GO:0003676
Dod10g1703 248 MobiDBLite consensus disorder prediction 179 248 - -
Dod10g1703 248 SMART FoP_duplication_2 179 248 IPR025715 -
Dod10g1703 248 Gene3D - 78 230 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1703 Dod-Chr10 38208791 38211268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1703 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.75e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1703 K12881 - gmx:100775827 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1703 10 38208791 38211268 Dod10g1703 10 38208791 38211268 ECH
Dod10g1703 10 38208791 38211268 Dod03g2909 03 61285797 61291183 PCT