Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1700 ATGCAATCAGGAACTCGAGGATTGTCGTTTTTCACTACGAAAGACCAGCTAAAGGCATTGTTCTCTCCTTTCGGAGAAGTTACAGAAGCGAGCCTAGTGATGGACCGCAGAACTGGAAGGACCAAAGGCTTCGGTTTTGTCTCCTACCAATCTGAAGTTGAAGCGCACAAGGCTATCAAAGCCATGAATGGCAGGGTAATTTCGTCTCAAACTTGA 216 0.463 MQSGTRGLSFFTTKDQLKALFSPFGEVTEASLVMDRRTGRTKGFGFVSYQSEVEAHKAIKAMNGRVISSQT* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1700 71 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 7 70 - -
Dod10g1700 71 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 70 IPR000504 GO:0003723
Dod10g1700 71 SMART rrm1_1 6 70 IPR000504 GO:0003723
Dod10g1700 71 Gene3D - 5 71 IPR012677 -
Dod10g1700 71 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 71 IPR000504 GO:0003723
Dod10g1700 71 SUPERFAMILY RNA-binding domain, RBD 6 69 IPR035979 GO:0003676
Dod10g1700 71 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 7 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1700 Dod-Chr10 38174481 38174984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1700 6 66 C2H2 Transcription Factor Family AT2G19380 42.623 7.36e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1700 - K13195 aprc:113856294 93.5893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1700 10 38174481 38174984 Dod10g1700 10 38174481 38174984 ECH