Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1689 ATGTCGCTCGAGGCTGAAATTTGCATTTTTCTAGGTGTATGTGTCCTGTGTTTTATACTGGTTCACCGCGACACTCTCAAGCGTCTCTTCTCAAGAGCTATCCGTTCAATTTCCCCTAGAAGCCCTTTTCAAGGGCAACATGGAGTTCCAGATGAGTTCTTCCATGATGATACTTCTCCTCCACAAAGCGTTGGCTTGGAGTATTCTTTTATAAGCTCTCTTCCCGTGTTTCAATATGGGAAAAATGAGGGAGATCAGAAGAAGCCAATTAACGCAGACTGTATTATTTGTTTGGGCGAATTTGAGAAAGGGGAAGAGCTTAAGCTTCTTCCTAGCTGCACTCACGGCTTCCATGTTTCATGCATTGATGCATGGTTTCAGTCTCATTCAAATTGTCCACTCTGCAGGTCTAATGTGCATCACACATGA 429 0.4359 MSLEAEICIFLGVCVLCFILVHRDTLKRLFSRAIRSISPRSPFQGQHGVPDEFFHDDTSPPQSVGLEYSFISSLPVFQYGKNEGDQKKPINADCIICLGEFEKGEELKLLPSCTHGFHVSCIDAWFQSHSNCPLCRSNVHHT* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1689 142 SMART ring_2 94 135 IPR001841 -
Dod10g1689 142 Pfam Ring finger domain 93 136 IPR001841 -
Dod10g1689 142 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Dod10g1689 142 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 139 IPR044675 -
Dod10g1689 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Dod10g1689 142 SUPERFAMILY RING/U-box 93 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1689 Dod-Chr10 38015692 38016120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1689 2 139 C3H Transcription Factor Family AT1G72220 34.014 8.78e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1689 - - adu:107461568 129.028