Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1688 ATGGCTCCACCTAAAGCTGATAGTTCGAAGAAGGCTGATCCAAAGACTCAGGCCTTGAAAACTGCTAAGGCTGTCAAGTCAGGCTCTACCTTTAAGAAGAAGGCCAAGAAGATTCGAACATCTGTCACATTTCATCGCCCAAAGACTTTGAAAAAGGATAGGAACCCCAAATACCCTCGTATTAGTGCTACACCAAGGAATAAGCTTGATCACTATCAGATTCTGAAATACCCTCTCACGACTGAGTCAGCAATGAAGAAGATCGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCGGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATACAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGCACCAAGAAAGCCTATGTGCGGTTGACCCCTGATTATGATGCCTTGGATGTAGCAAACAAGATCGGTATTATCTAA 465 0.4323 MAPPKADSSKKADPKTQALKTAKAVKSGSTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1688 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Dod10g1688 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod10g1688 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Dod10g1688 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Dod10g1688 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Dod10g1688 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod10g1688 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Dod10g1688 154 MobiDBLite consensus disorder prediction 1 38 - -
Dod10g1688 154 Gene3D - 35 154 IPR012677 -
Dod10g1688 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1688 Dod-Chr10 38011227 38013353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1688 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 5.28e-71 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1688 K02893 - jre:109021970 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1688 10 38011227 38013353 Dod10g1688 10 38011227 38013353 ECH
Dod10g1688 10 38011227 38013353 Dod03g2890 03 61077519 61079787 ECH
Dod10g1688 10 38011227 38013353 Dod03g2890 03 61077519 61079787 PCT