Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1658 ATGTTCGATCTCAACCTGAACGACGACTCGCACGTTCTGATGGAGGAGAAGCTTCAGGAAGCTTCCTCGGGGACCTCGAATTCCTCCGTGGTGAATGCGGAGGGTTCAAGCAACGGCAACGGTGGCGGAGACGACGACTCTTGCTCCACGCGCGCCACCGGGAGCGACGTCGTCACCTTCAATTTCGATATCCTGAAGGTGGAAGGAGGAAACGACGACGTCGTTTCGACGACGACAAAGGAGCTTTTCCCGGTGAGTGCGGGGAACTTCCAGAGAGGGCAGACTTCGACGTCGTCGTTCCCGGCGAGGAAGAGCTGGATGGATCTGTCGCTGGATCAGCATAGAGGTGAAAACGGCGAGATGAAGAAGACTATGGTTCAGGTTCAGCAGCAACAGCAACAACAGCCTCAGCAGCAACAGCCTCAGCAGCCAGTGAGGAAGAGCAGGAGGGGACCACGGTCTCGGAGCTCGCAGTACAGAGGAGTCACCTTCTATAGGAGAACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACAGCTCATGCAGCTGCTAGAGCCTATGATCGAGCTGCCATCAAGTTCAGGGGACTTGATGCTGACATCAATTTTAACCTCATTGACTATGAGGAGGATCTTAAACAGATGAAGAATCTCTCAAAGGAGGAATTTGTGCACATACTCCGTCGCCAAAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCCCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAGGCAGTGACTAACTTTGAGCCAAGTACATATGAAAGCGAGATGAAACCTGAAGCCATTAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTGGGCATAGCGACCCCAGGACATGGTCCCAAAGAAAACATGGGGCTTCTTCAGTTCCAGTCCGTCCCTTACAACGCAGATCCAGGAAGAAGTTCAAGGGTGGAGACCAATGTTAATTCTGTTATCGGTGATCCGTCTTTGAAAAGGCTGGTTGTAACTGAAGGGCGTCCTTCTGTATGGAATGCCACATATTCGAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCACATGGAGTCCCCAACTGGGCGTGGCAAACTCATGGTCAGGTCACTGCTACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCCATTTCAGCTACCTTTCCATCGACTGCCATCTTTCCAACAAAATCTATGAACTCAATTCCCCAGAGTCTCTGTTTCACTTCACCCAGCGCACCTGGTGGCAATGCATCTCAATATTATTACCAGGTGAAGTCCCCGCATGCACCGTCGTAG 1482 0.5047 MFDLNLNDDSHVLMEEKLQEASSGTSNSSVVNAEGSSNGNGGGDDDSCSTRATGSDVVTFNFDILKVEGGNDDVVSTTTKELFPVSAGNFQRGQTSTSSFPARKSWMDLSLDQHRGENGEMKKTMVQVQQQQQQQPQQQQPQQPVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLIDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHNLDLNLGIATPGHGPKENMGLLQFQSVPYNADPGRSSRVETNVNSVIGDPSLKRLVVTEGRPSVWNATYSSFFPNEERAERIGIDPSHGVPNWAWQTHGQVTATPVPPFSTAASSGFSISATFPSTAIFPTKSMNSIPQSLCFTSPSAPGGNASQYYYQVKSPHAPS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1658 493 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 MobiDBLite consensus disorder prediction 18 50 - -
Dod10g1658 493 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Dod10g1658 493 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Dod10g1658 493 MobiDBLite consensus disorder prediction 122 159 - -
Dod10g1658 493 MobiDBLite consensus disorder prediction 19 50 - -
Dod10g1658 493 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 462 - -
Dod10g1658 493 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 Coils Coil 111 131 - -
Dod10g1658 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 462 - -
Dod10g1658 493 MobiDBLite consensus disorder prediction 123 147 - -
Dod10g1658 493 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 SUPERFAMILY DNA-binding domain 157 214 IPR016177 GO:0003677
Dod10g1658 493 CDD AP2 158 213 IPR001471 GO:0003700|GO:0006355
Dod10g1658 493 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1658 Dod-Chr10 37612076 37616445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1658 140 347 AP2-EREBP Transcription Factor Family AT4G36920 77.251 2.08e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dod10g1658 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1658 K09284 - gmx:100777102 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1658 10 37612076 37616445 Dod10g1658 10 37612076 37616445 ECH
Dod10g1658 10 37612076 37616445 Dod03g2851 03 60440482 60444707 ECH
Dod10g1658 10 37612076 37616445 Dod03g2851 03 60440482 60444707 PCT