Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1647 ATGCATGGTACTAGGCTCCTATTTAACCCAGATATGCAAGAGGATGATTTCTACATAGTATATGCTATTGTTGTTGCTGTCACCAATGATGAGGATTGGTGGTATATAGCTTGCAAATGCAATAAGGCTGTAAACCCTCACTCTGGGATGTATTACTGTAAAAGTTGCTCCTGTCATGTTATGAATGTCACTTCTAGGTACCGAATTAAACTGTCTGTCATGGATGACTCAGGTTCCACTATCTTTGTGTTATTTGATCGTGAGGCATTTTCTATTCTAAAGATTCCATGTTCATTCTTGCTGGAAAAAACTGAAACAGACCATCGAGAAGCTATTGAGCATCCAAAAGAGTTTCAAGAGTATCTGATTCAGAAGAAATTCCTGTTCAAAGTTGAGGTTAGGACAGGGTTCAGAAGCCATCTTGAACCTTCATTTAAGGTTTCAAAGATATGCCATGATATAGAGGTTATATCTAAATTTTTAGACATGGTTAGAACCAATTCTGAAAAACCAAATGTTGAAATATCCAGTGACTATTACTCACCTGACGATGACTTCCTCAAGGTTACACCTACGAAGACAATTGAAGAACTGAAAGATTGTAGAAAAGATGGTGATTATGCTGTCTATGCTACAATTAAGGGTGTGGATGGTGGACCTAATTGGTTTATTGCAGCATGTAGATGTGGTACTGAGGTGGTTCCTCAAACAGGGTCTTACTACTGTGATAAGTGCAAAAAGCGTGTGGTGAATGTGATTCCGAGGTACAGAATTATGGCTAGAGTGATTGATGCTTCAGATAGTGCAACTTTTGTGATATTTGAAAAGCTTGGATGCTTATTGCTGCACAAGTCCTGTACTGAGATGTTGAAATCTACTGAAAATGATGGTTTGAACCTGAGTCAACCCTTAGCATTTCAACAAATGTTGGTTGATAGATCATTCATTTTCAAGGTTGAGGTTAAGAATAGCTGTTTCAACGATTTAGAACCATCATATGATGTCGTTGACATTTGTTTTAATGATTCGATCATCACACAGTTCAAGAATCTTAATCCTACCTTTTTTTCTGCTCAGACTGATTTGACAGCTAGCATATCATTTGGTGCAAAGACCTTGAATTTAGATATCTGTGATGCTTAG 1143 0.3753 MHGTRLLFNPDMQEDDFYIVYAIVVAVTNDEDWWYIACKCNKAVNPHSGMYYCKSCSCHVMNVTSRYRIKLSVMDDSGSTIFVLFDREAFSILKIPCSFLLEKTETDHREAIEHPKEFQEYLIQKKFLFKVEVRTGFRSHLEPSFKVSKICHDIEVISKFLDMVRTNSEKPNVEISSDYYSPDDDFLKVTPTKTIEELKDCRKDGDYAVYATIKGVDGGPNWFIAACRCGTEVVPQTGSYYCDKCKKRVVNVIPRYRIMARVIDASDSATFVIFEKLGCLLLHKSCTEMLKSTENDGLNLSQPLAFQQMLVDRSFIFKVEVKNSCFNDLEPSYDVVDICFNDSIITQFKNLNPTFFSAQTDLTASISFGAKTLNLDICDA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1647 380 Pfam Replication factor-A C terminal domain 17 134 IPR013955 -
Dod10g1647 380 Pfam Replication factor-A C terminal domain 208 329 IPR013955 -
Dod10g1647 380 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 12 97 - -
Dod10g1647 380 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 114 294 - -
Dod10g1647 380 CDD RPA1_DBD_C 9 150 IPR013955 -
Dod10g1647 380 SUPERFAMILY Nucleic acid-binding proteins 190 340 IPR012340 -
Dod10g1647 380 CDD RPA1_DBD_C 193 338 IPR013955 -
Dod10g1647 380 Gene3D - 187 344 IPR012340 -
Dod10g1647 380 Gene3D - 8 160 IPR012340 -
Dod10g1647 380 SUPERFAMILY Nucleic acid-binding proteins 13 137 IPR012340 -
Dod10g1647 380 PANTHER REPLICATION FACTOR A 1, RFA1 12 97 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod10g1647 380 PANTHER REPLICATION FACTOR A 1, RFA1 114 294 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1647 Dod-Chr10 37448286 37450616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1647 9 120 Core DNA Replication Machinery Family AT5G61000 33.051 1.57e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1647 - - adu:107489307 276.944