Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod10g1640 ATGGAAATTGATCTGAACCATGCAGTGACTGAGACTGAAAAGAATGCAACTTGCAATGGGGACTGTGAGAAAGGTGCTTCTTGTGTGTGCTCTTCAACATGTTCATCTTCTACTTCCCCTTCAGCTGCTGGTGTTTCTTCTTCTTCTTACCTTGAGCTTTGGCATGCGTGTGCTGGCCCTCTCACCTCTCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTCCCACAAGGGCACTTAGAACAAGCTGCATCTTTCTCTCCTTTCTCAACAATGGAGGTTTCAACCTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAATGTCCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTTCCCCAGCCAGAGTTGGCAGTGAAGTATTTGGAGGGCAAAGAGCTTGAGGAATTGGGAGCAGATGAGGAAGGAAGTGGAAGATCACCAACAAAATCAACCCCTCACATGTTCTGCAAGACACTTACTGCCTCTGATACAAGCACTCATGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTGTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAATCTGTTGTTGGTAACCAGAACTGTCATCCCGATTTCCTTTCTTCTGTGGCTAATGCTATATCCGCGAAAAGCATGTTTCATGTTTTTTACAGTCCAAGGGCAAGTCATGCAGATTTTGTTGTGCCCTGCCAAAAGTATGTCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCACCAGACAGAAGGTGCACTGGTGGTATTGTGACCGGAATGAGTGATTTGGATCCATATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGACTTTGAGACTAATCATCAGGATCGAGTATCTCCATGGGAGATTGATCCCTCTGCTTCTTTTCCACCCTTGAGCATTCAGTCTTCACCAAGGCTGAAGAAACTGCGGACAAGTCTGCAGGCTGCCTCATCCAGTCACCTCATCACAGGGGTGGCAGCAGGAGGTACTGGGTTTATGGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTGTATTATGGATGTGACGCAGTAACTAAGCAGCCAGGTTTTGAGATCAGTTCTACAAGTCATCCAAATCTTGCATCAACTGGACTAAGAAAGATCACTGCTGCTGAGCTTATGAGGGTTCACCCTCCTGGTTATGCAGGCTTCACGGAAGCTAATAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGAGATCCCTGACAGGAAAGGTTGATTTAAACCTTGGTGCTTGGGGAAAAACCAATGCCAGTTGCACAACTTACAATCTGCATCAGGCTACCAAACCCAGCTTTGACTCTTTTGGAGCAGAAGTTCTTCAAGCTGCATACTTTCCATATGGTGATATTCACAAAGCTGGTCGTGGCAGCAGCATGTTGTGCTCTAGACCCACCAGGGTCCAACAAGAGTGTGTCCCATTCAACACTCCTTCCACTCAGTCAGGGATCATTAGAAATGAAGTTGGACGATCAGAACTCCCAATCCCACATGAGCAGCAGCTGCAGGATAATATTTCTGCGGCCGCTACTTTAGGGGCAAACAACATTAGGATTCCAAATGATGACAACTTCAAGGGGAAGATAAATGCCTGTAAACTATTTGGAGTTGCCTTGTCTGGGGAAACTCCCACCCAAAACATACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTGGGAAGAGCCATCGATCTCTCAAGATTGAGCAGCTACAGTGACCTGATGAGTGAACTAGAGAGACTGTTTGGCATGGAAGGCCTACTTAGAGATCCTGGTAAGGGATGGAGGATTCTGTACACAGACAGCGAAAATGACATCATGGTTGTGGGGGATGACCCTTGGCTTGAGTTTTGCGATGTGGTATCCAAGATCCATATATATGCACAAGAAGAAGTGGAAAAGATGACAATTGGCATGATCAGTGATGATACACACAGCTGTTTGGAACAGGCACCGGTCATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGCCAGCCAGATTCTTCCCCAACAGTAGTTAGAATCTAG 2427 0.4561 MEIDLNHAVTETEKNATCNGDCEKGASCVCSSTCSSSTSPSAAGVSSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSTMEVSTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELAVKYLEGKELEELGADEEGSGRSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESVVGNQNCHPDFLSSVANAISAKSMFHVFYSPRASHADFVVPCQKYVKSIKNPVTIGTRFKMKFEMDESPDRRCTGGIVTGMSDLDPYRWPKSKWRCLMVRWDEDFETNHQDRVSPWEIDPSASFPPLSIQSSPRLKKLRTSLQAASSSHLITGVAAGGTGFMDFEESVRSPKVLQGQEKTSFMSLYYGCDAVTKQPGFEISSTSHPNLASTGLRKITAAELMRVHPPGYAGFTEANRFPRVLQGQEICPLRSLTGKVDLNLGAWGKTNASCTTYNLHQATKPSFDSFGAEVLQAAYFPYGDIHKAGRGSSMLCSRPTRVQQECVPFNTPSTQSGIIRNEVGRSELPIPHEQQLQDNISAAATLGANNIRIPNDDNFKGKINACKLFGVALSGETPTQNIQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYSDLMSELERLFGMEGLLRDPGKGWRILYTDSENDIMVVGDDPWLEFCDVVSKIHIYAQEEVEKMTIGMISDDTHSCLEQAPVIMEASKSSSVGQPDSSPTVVRI* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod10g1640 808 SMART B3_2 164 266 IPR003340 GO:0003677
Dod10g1640 808 ProSiteProfiles PB1 domain profile. 680 762 IPR000270 GO:0005515
Dod10g1640 808 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Dod10g1640 808 Gene3D - 328 400 - -
Dod10g1640 808 CDD B3_DNA 162 264 IPR003340 GO:0003677
Dod10g1640 808 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Dod10g1640 808 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 796 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod10g1640 808 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod10g1640 808 PANTHER AUXIN RESPONSE FACTOR 10 796 - -
Dod10g1640 808 SUPERFAMILY DNA-binding pseudobarrel domain 156 277 IPR015300 -
Dod10g1640 808 Gene3D - 162 266 IPR015300 -
Dod10g1640 808 Pfam AUX/IAA family 674 764 IPR033389 -
Dod10g1640 808 Gene3D - 676 769 - -
Dod10g1640 808 SUPERFAMILY CAD & PB1 domains 683 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod10g1640 Dod-Chr10 37319846 37326631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod10g1640 44 808 B3 DNA Binding Superfamily AT5G60450 59.197 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod10g1640 AUX_IAA 3e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod10g1640 - - ahf:112706773 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g1640 10 37319846 37326631 Dod10g1640 10 37319846 37326631 ECH
Dod10g1640 10 37319846 37326631 Dod03g2821 03 60091512 60097463 PCT